Endonucleolytic initiation of mRNA decay in Escherichia coli, Prog. Mol. Biol. Transl. Sci, vol.85, pp.91-135, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00368990
RNases and helicases in Gram-positive bacteria, Microbiol. Spectr, vol.6, pp.37-53, 2018. ,
Regulation of mRNA decay in bacteria, Annu. Rev. Microbiol, vol.70, pp.25-44, 2016. ,
mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale, Mol. Microbiol, vol.70, pp.183-196, 2008. ,
The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes, Mol. Microbiol, vol.75, pp.731-743, 2010. ,
5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA, Cell, vol.129, pp.681-692, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00159472
Twenty years of bacterial RNases and RNA processing: how we've matured, RNA, vol.21, pp.597-600, 2015. ,
In vivo cleavage map illuminates the central role of RNase E in coding and non-coding RNA pathways, Mol. Cell, vol.65, pp.39-51, 2017. ,
RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis, EMBO J, vol.28, pp.3523-3533, 2009. ,
Decay-initiating endoribonucleolytic cleavage by RNase Y is kept under tight control via sequence preference and sub-cellular localisation, PLoS Genet, vol.11, p.1005577, 2015. ,
RNase Y-mediated regulation of the streptococcal pyrogenic exotoxin B, RNA Biol, vol.15, pp.1336-1347, 2018. ,
Downstream element determines RNase Y cleavage of the saePQRS operon in Staphylococcus aureus, Nucleic Acids Res, vol.45, pp.5980-5994, 2017. ,
The role of 3'-5' exoribonucleases in RNA degradation, Prog. Mol. Biol. Transl. Sci, vol.85, pp.187-229, 2009. ,
RNase R is a highly unstable protein regulated by growth phase and stress, RNA, vol.16, pp.667-672, 2010. ,
Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12, Proc. Natl Acad. Sci. USA, vol.83, pp.120-124, 1986. ,
Participation of 3'-to-5' exoribonucleases in the turnover of Bacillus subtilis mRNA, J. Bacteriol, vol.187, pp.2758-2767, 2005. ,
In vivo 3?-to-5? exoribonuclease targetomes of Streptococcus pyogenes, Proc. Natl Acad. Sci. USA, vol.115, pp.11814-11819, 2018. ,
Maturation of polycistronic mRNAs by the endoribonuclease RNase Y and its associated Y-complex in Bacillus subtilis, Proc. Natl Acad. Sci. USA, vol.115, pp.5585-5594, 2018. ,
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III in Streptococcus pyogenes, Nucleic Acids Res, vol.45, pp.2329-2340, 2017. ,
Biochemical characterization of Campylobacter jejuni PNPase, an exoribonuclease important for bacterial pathogenicity, Biochimie, vol.147, pp.70-79, 2018. ,
Action of RNase II and polynucleotide phosphorylase against RNAs containing stem-loops of defined structure, J. Bacteriol, vol.182, pp.2422-2427, 2000. ,
Maturation pathways for E. coli tRNA precursors: a random multienzyme process in vivo, Cell, vol.86, pp.503-512, 1996. ,
mRNA degradation by processive 3'-5' exoribonucleases in vitro and the implications for prokaryotic mRNA decay in vivo, J. Mol. Biol, vol.221, pp.81-95, 1991. ,
Expression of multiple Bacillus subtilis genes is controlled by decay of slrA mRNA from Rho-dependent 3' ends, Nucleic Acids Res, vol.44, pp.3364-3372, 2016. ,
The special existences: nanoRNA and nanoRNase, Microbiol. Res, vol.207, pp.134-139, 2018. ,
Polynucleotide phosphorylase promotes the stability and function of Hfq-binding sRNAs by degrading target mRNA-derived fragments, Nucleic Acids Res, vol.46, pp.8821-8837, 2019. ,
When ribonucleases come into play in pathogens: a survey of gram-positive bacteria, Int. J. Microbiol, vol.2012, p.592196, 2012. ,
Multiple roles of RNase Y in Streptococcus pyogenes mRNA processing and degradation, J. Bacteriol, vol.195, pp.2585-2594, 2013. ,
Interaction of Bacillus subtilis Polynucleotide phosphorylase and RNase Y: structural mapping and effect on mRNA turnover, J. Biol. Chem, vol.291, pp.6655-6663, 2016. ,
Initiation of mRNA decay in bacteria, Cell. Mol. Life Sci, vol.71, pp.1799-1828, 2014. ,
Initiation of decay of Bacillus subtilis trp leader RNA, J. Biol. Chem, vol.282, pp.20238-20244, 2007. ,
RNase Y is responsible for uncoupling the expression of translation factor IF3 from that of the ribosomal proteins L35 and L20 in Bacillus subtilis, Mol. Microbiol, vol.81, pp.1526-1541, 2011. ,
Integrative genomics viewer, Nat. Biotechnol, vol.29, pp.24-26, 2011. ,
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration, Brief. Bioinforma, vol.14, pp.178-192, 2013. ,
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features, Bioinformatics, vol.30, pp.923-930, 2014. ,
edgeR: a bioconductor package for differential expression analysis of digital gene expression data, Bioinformatics, vol.26, pp.139-140, 2010. ,
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation, Nucleic Acids Res, vol.40, pp.4288-4297, 2012. ,
ViennaRNA Package 2.0, Algorithms Mol. Biol, vol.6, p.26, 2011. ,
WebLogo: a sequence logo generator, Genome Res, vol.14, pp.1188-1190, 2004. ,
RNA sequencing uncovers antisense RNAs and novel small RNAs in Streptococcus pyogenes, RNA Biol, vol.13, pp.177-195, 2016. ,