TGF-? signaling through SMAD2/3 induces the quiescent microglial phenotype within the CNS environment, Glia, vol.60, pp.1160-1171, 2012. ,
Deciphering the transcriptional histone acetylation code for a human gene, Cell, vol.111, pp.381-392, 2002. ,
High-resolution profiling of histone methylations in the human genome, Cell, vol.129, pp.823-837, 2007. ,
, The NIH Roadmap Epigenomics Mapping Consortium, vol.28, pp.1045-1048, 2010.
Histone modification in Drosophila, Brief Funct Genomics, vol.11, pp.319-331, 2012. ,
High-resolution mapping and characterization of open chromatin across the genome, Cell, vol.132, pp.311-322, 2008. ,
Modification of enhancer chromatin: what, how, and why?, Mol Cell, vol.49, pp.825-837, 2013. ,
Genomewide analysis of mammalian promoter architecture and evolution, Nat Genet, vol.38, pp.626-635, 2006. ,
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells, Cell, vol.133, pp.1106-1117, 2008. ,
Detection of single nucleotide variations in expressed exons of the human genome using RNA-seq, Nucleic Acids Res, vol.37, p.106, 2009. ,
Noncoding origins of anthropoid traits and a new null model of transposon functionalization, Genome Res, vol.24, pp.1469-1484, 2014. ,
Sensitive detection of chromatin-altering polymorphisms reveals autoimmune disease mechanisms, Nat Methods, vol.12, pp.458-464, 2015. ,
, An integrated encyclopedia of DNA elements in the human genome, Nature, vol.489, pp.57-74, 2012.
Discovery and characterization of chromatin states for systematic annotation of the human genome, Nat Biotechnol, vol.28, pp.817-825, 2010. ,
ChromHMM: automating chromatin-state discovery and characterization, Nat Methods, vol.9, pp.215-216, 2012. ,
Mapping and analysis of chromatin state dynamics in nine human cell types, Nature, vol.473, pp.43-49, 2011. ,
NF-kB inhibitor blocks B cell development at two checkpoints, Med Immunol, vol.3, p.1, 2004. ,
Architecture of the human regulatory network derived from ENCODE data, Nature, vol.489, pp.91-100, 2012. ,
Control of inducible gene expression by signal-dependent transcriptional elongation, Cell, vol.138, pp.129-145, 2009. ,
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells, Cell Stem Cell, vol.6, pp.479-491, 2010. ,
Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin, Genome Res, vol.25, pp.504-513, 2015. ,
A high-resolution map of the three-dimensional chromatin interactome in human cells, Nature, vol.503, pp.290-294, 2013. ,
Uniform, optimal signal processing of mapped deep-sequencing data, Nat Biotechnol, vol.31, pp.615-622, 2013. ,
Integrative analysis of 111 reference human epigenomes, Nature, vol.518, pp.317-330, 2015. ,
High-throughput functional testing of ENCODE segmentation predictions, Genome Res, vol.24, pp.1595-1602, 2014. ,
Finding associations among histone modifications using sparse partial correlation networks, PLoS Comput Biol, vol.9, p.1003168, 2013. ,
Efficient endoderm induction from human pluripotent stem cells by logically directing signals controlling lineage bifurcations, Cell Stem Cell, vol.14, pp.237-252, 2014. ,
GREAT improves functional interpretation of cis-regulatory regions, Nat Biotechnol, vol.28, pp.495-501, 2010. ,
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells, Nature, vol.448, pp.553-560, 2007. ,
FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells, Nat Methods, vol.11, pp.559-565, 2014. ,
In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures, Dev Cell, vol.24, pp.324-333, 2013. ,
Ncoa3 functions as an essential Esrrb coactivator to sustain embryonic stem cell self-renewal and reprogramming, Genes Dev, vol.26, pp.2286-2298, 2012. ,
On silico peptide microarrays for highresolution mapping of antibody epitopes and diverse protein-protein interactions, Nat Med, vol.18, pp.1434-1440, 2012. ,
A unique chromatin signature uncovers early developmental enhancers in humans, Nature, vol.470, pp.279-283, 2011. ,
RFECS: a random-forest based algorithm for enhancer identification from chromatin state, PLoS Comput Biol, vol.9, p.1002968, 2013. ,
Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies, G3 (Bethesda), vol.4, pp.2051-2063, 2014. ,
Regulation of B cell fate commitment and immunoglobulin heavy-chain gene rearrangements by Ikaros, Nat Immunol, vol.9, pp.927-936, 2008. ,
Vitamin A and retinoic acid in the regulation of B-cell development and antibody production, Vitam Horm, vol.86, pp.103-126, 2011. ,
The long-range interaction landscape of gene promoters, Nature, vol.489, pp.109-113 ,
A map of the cis-regulatory sequences in the mouse genome, Nature, vol.488, pp.116-120, 2012. ,
Regulation of RNA polymerase II activation by histone acetylation in single living cells, Nature, vol.516, pp.272-275, 2014. ,
Transforming growth factor-? suppresses activation and proliferation of microglia in vitro, J Immunol, vol.151, pp.2150-2158, 1993. ,
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification, Cell, vol.146, pp.1016-1028, 2011. ,
VISTA Enhancer Browser: a database of tissue-specific human enhancers, Nucleic Acids Res, vol.35, pp.88-92, 2007. ,
Combinatorial patterns of histone acetylations and methylations in the human genome, Nat Genet, vol.40, pp.897-903, 2008. ,
High-resolution chromatin dynamics during a yeast stress response, Mol Cell, vol.58, pp.371-386, 2015. ,