J. Jullien, V. Pasque, R. P. Halley-stott, K. Miyamoto, and J. B. Gurdon, Mechanisms of nuclear reprogramming by eggs and oocytes: a deterministic process?, Nat Rev Mol Cell Biol, vol.12, pp.453-459, 2011.

J. H. Hanna, K. Saha, and R. Jaenisch, Pluripotency and cellular reprogramming: facts, hypotheses, unresolved issues, Cell, vol.143, pp.508-525, 2010.

K. Hochedlinger and K. Plath, Epigenetic reprogramming and induced pluripotency, Development, vol.136, pp.509-523, 2009.

J. Maruotti, A. Jouneau, and J. P. Renard, Faithful reprogramming to pluripotency in mammals -what does nuclear transfer teach us?, Int J Dev Biol, vol.54, pp.1609-1621, 2010.

A. Gaspar-maia, A. Alajem, E. Meshorer, and M. Ramalho-santos, Open chromatin in pluripotency and reprogramming, Nat Rev Mol Cell Biol, vol.12, pp.36-47, 2011.

X. Yang, S. L. Smith, X. C. Tian, H. A. Lewin, and J. P. Renard, Nuclear reprogramming of cloned embryos and its implications for therapeutic cloning, Nat Genet, vol.39, pp.295-302, 2007.

J. S. Greenstein, R. W. Murray, and R. C. Foley, Observations on the morphogenesis and histochemistry of the bovine preattachment placenta between 16 and 33 days of gestation, Anat Rec, vol.132, pp.321-341, 1958.

Y. Heyman, Nuclear transfer: a new tool for reproductive biotechnology in cattle, Reprod Nutr Dev, vol.45, pp.353-361, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00900566

W. A. King, G. Coppola, B. Alexander, G. Mastromonaco, and S. Perrault, The impact of chromosomal alteration on embryo development, Theriogenology, vol.65, pp.166-177, 2006.

P. Loi, N. Beaujean, S. Khochbin, J. Fulka, J. Ptak et al., Asymmetric nuclear reprogramming in somatic cell nuclear transfer?, Bioessays, vol.30, pp.66-74, 2008.

H. Niemann, X. C. Tian, W. A. King, and R. S. Lee, Epigenetic reprogramming in embryonic and foetal development upon somatic cell nuclear transfer cloning, Reproduction, vol.135, pp.151-163, 2008.

X. C. Tian, C. Kubota, B. Enright, and X. Yang, Cloning animals by somatic cell nuclear transfer-biological factors, Reprod Biol Endocrinol, vol.1, p.98, 2003.

K. M. Whitworth and R. S. Prather, Somatic cell nuclear transfer efficiency: how can it be improved through nuclear remodeling and reprogramming?, Mol Reprod Dev, vol.77, pp.1001-1015, 2010.

I. Wilmut, Are there any normal clones?, Methods Mol Biol, vol.348, pp.307-318, 2006.

J. Zhao, J. Whyte, and R. S. Prather, Effect of epigenetic regulation during swine embryogenesis and on cloning by nuclear transfer, Cell Tissue Res, vol.341, pp.13-21, 2010.

D. K. Berg, J. Van-leeuwen, S. Beaumont, M. Berg, and P. L. Pfeffer, Embryo loss in cattle between Days 7 and 16 of pregnancy, Theriogenology, vol.73, pp.250-260, 2010.

Y. Kato, X. Li, D. Amarnath, K. Ushizawa, and K. Hashizume, Comparative gene expression analysis of bovine nuclear-transferred embryos with different developmental potential by cDNA microarray and real-time PCR to determine genes that might reflect calf normality, Cloning Stem Cells, vol.9, pp.495-511, 2007.

D. Lucifero, J. Suzuki, V. Bordignon, J. Martel, and C. Vigneault, Bovine SNRPN methylation imprint in oocytes and day 17 in vitro-produced and somatic cell nuclear transfer embryos, Biol Reprod, vol.75, pp.531-538, 2006.

L. Rodriguez-alvarez, J. Sharbati, S. Sharbati, J. F. Cox, and R. Einspanier, Differential gene expression in bovine elongated (Day 17) embryos produced by somatic cell nucleus transfer and in vitro fertilization, Theriogenology, vol.74, pp.45-59, 2010.

J. Suzuki, J. Therrien, F. Filion, R. Lefebvre, and A. K. Goff, Loss of methylation at H19 DMD is associated with biallelic expression and reduced development in cattle derived by somatic cell nuclear transfer, Biol Reprod, vol.84, pp.947-956, 2011.

Y. Heyman, S. Camous, J. Fevre, W. Meziou, and J. Martal, Maintenance of the corpus luteum after uterine transfer of trophoblastic vesicles to cyclic cows and ewes, J Reprod Fertil, vol.70, pp.533-540, 1984.

N. I. Alexopoulos, P. Maddox-hyttel, P. Tveden-nyborg, D. Cruz, N. T. Tecirlioglu et al., Developmental disparity between in vitro-produced and somatic cell nuclear transfer bovine days 14 and 21 embryos: implications for embryonic loss, Reproduction, vol.136, pp.433-445, 2008.

S. A. Degrelle, E. Campion, C. Cabau, F. Piumi, and P. Reinaud, Molecular evidence for a critical period in mural trophoblast development in bovine blastocysts, Dev Biol, vol.288, pp.448-460, 2005.

S. A. Degrelle, L. Cao, K. A. Heyman, Y. Everts, R. E. Campion et al., A small set of extra-embryonic genes defines a new landmark for bovine embryo staging, Reproduction, vol.141, pp.79-89, 2011.
URL : https://hal.archives-ouvertes.fr/hal-01000888

K. Betteridge and J. Flechon, The anatomy and physiology of pre-attachment bovine embryos, Theriogenology, vol.29, pp.155-187, 1988.

I. Hue, S. A. Degrelle, E. Campion, and J. P. Renard, Gene expression in elongating and gastrulating embryos from ruminants, Soc Reprod Fertil Suppl, vol.64, pp.365-377, 2007.

P. Maddox-hyttel, N. I. Alexopoulos, G. Vajta, I. Lewis, and P. Rogers, Immunohistochemical and ultrastructural characterization of the initial posthatching development of bovine embryos, Reproduction, vol.125, pp.607-623, 2003.

J. E. Flechon, J. Degrouard, and B. Flechon, Gastrulation events in the prestreak pig embryo: ultrastructure and cell markers, Genesis, vol.38, pp.13-25, 2004.

M. Guillomot, Cellular interactions during implantation in domestic ruminants, J Reprod Fertil Suppl, vol.49, pp.39-51, 1995.

J. E. Flechon, B. Flechon, J. Degrouard, and M. Guillomot, Cellular features of the extra-embryonic endoderm during elongation in the ovine conceptus, Genesis, vol.45, pp.709-715, 2007.

M. Guillomot, A. Turbe, I. Hue, and J. P. Renard, Staging of ovine embryos and expression of the T-box genes Brachyury and Eomesodermin around gastrulation, Reproduction, vol.127, pp.491-501, 2004.

L. C. Bui, A. V. Evsikov, D. R. Khan, C. Archilla, and N. Peynot, Retrotransposon expression as a defining event of genome reprogramming in fertilized and cloned bovine embryos, Reproduction, vol.138, pp.289-299, 2009.

J. P. Renard, J. Maruotti, A. Jouneau, and X. Vignon, Nuclear reprogramming and pluripotency of embryonic cells: Application to the isolation of embryonic stem cells in farm animals, Theriogenology, vol.68, pp.196-205, 2007.

N. Ameen and G. Apodaca, Defective CFTR apical endocytosis and enterocyte brush border in myosin VI-deficient mice, Traffic, vol.8, pp.998-1006, 2007.

C. M. Longo-guess, L. H. Gagnon, S. A. Cook, J. Wu, and Q. Y. Zheng, A missense mutation in the previously undescribed gene Tmhs underlies deafness in hurry-scurry (hscy) mice, Proc Natl Acad Sci U S A, vol.102, pp.7894-7899, 2005.

T. Self, T. Sobe, N. G. Copeland, N. A. Jenkins, and K. B. Avraham, Role of myosin VI in the differentiation of cochlear hair cells, Dev Biol, vol.214, pp.331-341, 1999.

K. Nadra, S. I. Anghel, J. E. Tan, N. S. Basu-modak, and S. , Differentiation of trophoblast giant cells and their metabolic functions are dependent on peroxisome proliferator-activated receptor beta/delta, Mol Cell Biol, vol.26, pp.3266-3281, 2006.

I. Hue, J. P. Renard, and C. Viebahn, Brachyury is expressed in gastrulating bovine embryos well ahead of implantation, Dev Genes Evol, vol.211, pp.157-159, 2001.

L. Martin, C. Besch-williford, L. Lai, H. T. Cheong, and G. S. Im, Morphologic and histologic comparisons between in vivo and nuclear transfer derived porcine embryos, Mol Reprod Dev, vol.74, pp.952-960, 2007.

L. Rodriguez-alvarez, J. Cox, H. Tovar, R. Einspanier, and F. O. Castro, Changes in the expression of pluripotency-associated genes during preimplantation and peri-implantation stages in bovine cloned and in vitro produced embryos, Zygote, vol.18, pp.269-279, 2010.

P. Tveden-nyborg, T. T. Peura, K. M. Hartwich, S. K. Walker, and P. Maddox-hyttel, Morphological characterization of pre-and peri-implantation in vitro cultured, somatic cell nuclear transfer and in vivo derived ovine embryos, Reproduction, vol.130, pp.681-694, 2005.

J. F. Hasler, W. B. Henderson, P. J. Hurtgen, Z. Q. Jin, and A. D. Mccauley, Production, freezing and transfer of bovine IVF embryos and subsequent calving results, Theriogenology, vol.43, pp.141-152, 1995.

H. D. Reichenbach, J. Liebrich, U. Berg, and G. Brem, Pregnancy rates and births after unilateral or bilateral transfer of bovine embryos produced in vitro, J Reprod Fertil, vol.95, pp.363-370, 1992.

P. Chesne, P. G. Adenot, C. Viglietta, M. Baratte, and L. Boulanger, Cloned rabbits produced by nuclear transfer from adult somatic cells, Nat Biotechnol, vol.20, pp.366-369, 2002.

S. Bauersachs, S. E. Ulbrich, V. Zakhartchenko, M. Minten, and M. Reichenbach, The endometrium responds differently to cloned versus fertilized embryos, Proc Natl Acad Sci U S A, vol.106, pp.5681-5686, 2009.

N. Mansouri-attia, S. O. , A. J. Degrelle, S. Everts, and R. E. , Endometrium as an early sensor of in vitro embryo manipulation technologies, Proc Natl Acad Sci U S A, vol.106, pp.5687-5692, 2009.

F. Bertocchini and C. D. Stern, The hypoblast of the chick embryo positions the primitive streak by antagonizing nodal signaling, Dev Cell, vol.3, pp.735-744, 2002.

J. Idkowiak, G. Weisheit, J. Plitzner, and C. Viebahn, Hypoblast controls mesoderm generation and axial patterning in the gastrulating rabbit embryo, Dev Genes Evol, vol.214, pp.591-605, 2004.

A. Perea-gomez, F. D. Vella, W. Shawlot, M. Oulad-abdelghani, and C. Chazaud, Nodal antagonists in the anterior visceral endoderm prevent the formation of multiple primitive streaks, Dev Cell, vol.3, pp.745-756, 2002.

A. Jouneau, Q. Zhou, A. Camus, V. Brochard, and L. Maulny, Developmental abnormalities of NT mouse embryos appear early after implantation, Development, vol.133, pp.1597-1607, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00096257

H. A. Adams, B. R. Southey, R. E. Everts, S. L. Marjani, and C. X. Tian, Transferase activity function and system development process are critical in cattle embryo development, Funct Integr Genomics, vol.11, pp.139-150, 2011.

J. Maruotti, M. Muñ-oz, S. A. Degrelle, E. Gómez, and C. Louet, Efficient derivation of bovine embryonic stem cells needs more than active core pluripotency factors, Mol Reprod Dev, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01000771

R. Alberio, N. Croxall, and C. Allegrucci, Pig epiblast stem cells depend on activin/nodal signaling for pluripotency and self-renewal, Stem Cells Dev, vol.19, pp.1627-1636, 2010.

J. Maruotti, X. P. Dai, V. Brochard, L. Jouneau, and J. Liu, Nuclear transferderived epiblast stem cells are transcriptionally and epigenetically distinguishable from their fertilized-derived counterparts, Stem Cells, vol.28, pp.743-752, 2010.

K. Sawai, Studies on gene expression in bovine embryos derived from somatic cell nuclear transfer, J Reprod Dev, vol.55, pp.11-16, 2009.

K. Sawai, S. Kageyama, S. Moriyasu, H. Hirayama, and A. Minamihashi, Changes in the mRNA transcripts of insulin-like growth factor ligand, receptors and binding proteins in bovine blastocysts and elongated embryos derived from somatic cell nuclear transfer, J Reprod Dev, vol.53, pp.77-86, 2007.

T. Fujii, S. Moriyasu, H. Hirayama, T. Hashizume, and K. Sawai, Aberrant expression patterns of genes involved in segregation of inner cell mass and trophectoderm lineages in bovine embryos derived from somatic cell nuclear transfer, Cell Reprogram, vol.12, pp.617-625, 2010.

C. S. Smith, D. K. Berg, M. Berg, and P. L. Pfeffer, Nuclear transfer-specific defects are not apparent during the second week of embryogenesis in cattle, Cell Reprogram, vol.12, pp.699-707, 2010.

J. Y. Kim, R. C. Burghardt, G. Wu, G. A. Johnson, and T. E. Spencer, Select nutrients in the ovine uterine lumen. VII. Effects of arginine, leucine, glutamine, and glucose on trophectoderm cell signaling, proliferation, and migration, Biol Reprod, vol.84, pp.62-69, 2011.

T. Rozario, B. Dzamba, G. F. Weber, L. A. Davidson, and D. W. Desimone, The physical state of fibronectin matrix differentially regulates morphogenetic movements in vivo, Dev Biol, vol.327, pp.386-398, 2009.

H. Miki, N. Wakisaka, K. Inoue, N. Ogonuki, and M. Mori, Embryonic rather than extraembryonic tissues have more impact on the development of placental hyperplasia in cloned mice, Placenta, vol.30, pp.543-546, 2009.

M. J. Soares and K. Asanoma, Trophoblast stem cells derived from nuclear transfer embryos: phenotypically unique, bad neighbors, or poor communicators?, Proc Natl Acad Sci U S A, vol.106, pp.16014-16015, 2009.

P. Chavatte-palmer, S. Camous, H. Jammes, L. Cleac'h, N. Guillomot et al., Review: Placental perturbations induce the developmental abnormalities often observed in bovine somatic cell nuclear transfer, Placenta, p.13, 2011.

B. Schuettengruber and G. Cavalli, Recruitment of polycomb group complexes and their role in the dynamic regulation of cell fate choice, Development, vol.136, pp.3531-3542, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00429406

E. Fitzpatrick, M. P. Johnson, T. D. Dyer, S. Forrest, and K. Elliott, Genetic association of the activin A receptor gene (ACVR2A) and pre-eclampsia, Mol Hum Reprod, vol.15, pp.195-204, 2009.

L. T. Roten, M. P. Johnson, S. Forsmo, E. Fitzpatrick, and T. D. Dyer, Association between the candidate susceptibility gene ACVR2A on chromosome 2q22 and pre-eclampsia in a large Norwegian population-based study (the HUNT study), Eur J Hum Genet, vol.17, pp.250-257, 2009.

M. Van-dijk and C. B. Oudejans, STOX1: Key Player in Trophoblast Dysfunction Underlying Early Onset Preeclampsia with Growth Retardation, J Pregnancy, p.521826, 2011.

K. Takahashi and S. Yamanaka, Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors, Cell, vol.126, pp.663-676, 2006.

M. Wernig, A. Meissner, R. Foreman, T. Brambrink, and M. Ku, In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state, Nature, vol.448, pp.318-324, 2007.

F. Yu, J. Li, H. Chen, J. Fu, and S. Ray, Kruppel-like factor 4 (KLF4) is required for maintenance of breast cancer stem cells and for cell migration and invasion, Oncogene, vol.30, pp.2161-2172, 2011.

K. Akaogi, Y. Nakajima, I. Ito, S. Kawasaki, and S. H. Oie, KLF4 suppresses estrogen-dependent breast cancer growth by inhibiting the transcriptional activity of ERalpha, Oncogene, vol.28, pp.2894-2902, 2009.

H. J. Kee and H. Kook, Kruppel-like factor 4 mediates histone deacetylase inhibitor-induced prevention of cardiac hypertrophy, J Mol Cell Cardiol, vol.47, pp.770-780, 2009.

D. R. Khan, D. Dube, L. Gall, N. Peynot, and S. Ruffini, Expression of Pluripotency Master Regulators during Two Key Developmental Transitions: EGA and Early Lineage Specification in the Bovine Embryo, PLoS One, vol.7, p.34110, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01000766

X. Dai, J. Hao, X. J. Hou, T. Hai, and Y. Fan, Somatic nucleus reprogramming is significantly improved by m-carboxycinnamic acid bishydroxamide, a histone deacetylase inhibitor, J Biol Chem, vol.285, pp.31002-31010, 2010.

T. Hai, J. Hao, L. Wang, A. Jouneau, and Q. Zhou, Pluripotency maintenance in mouse somatic cell nuclear transfer embryos and its improvement by treatment with the histone deacetylase inhibitor TSA, Cell Reprogram, vol.13, pp.47-56, 2011.
URL : https://hal.archives-ouvertes.fr/hal-01001201

S. Matoba, K. Inoue, T. Kohda, M. Sugimoto, and E. Mizutani, RNAimediated knockdown of Xist can rescue the impaired postimplantation development of cloned mouse embryos, Proc Natl Acad Sci U S A, vol.108, pp.20621-20626, 2011.

X. Vignon, L. Bourhis, D. Adenot, P. Marchal, J. Lavergne et al., Production of bovine embryos by nuclear transfer of adult skin fibroblasts: the effect of serum starvation, Theriogenology, vol.53, p.245, 2000.

B. C. Alves, V. F. Hossepian-de-lima, C. M. Teixeira, and C. A. Moreira-filho, Use of primers derived from a new sequence of the bovine Y chromosome for sexing Bos taurus and Bos indicus embryos, Theriogenology, vol.59, pp.1415-1419, 2003.

S. A. Degrelle, C. Hennequet-antier, H. Chiapello, K. Piot-kaminski, and F. Piumi, Amplification biases: possible differences among deviating gene expressions, BMC Genomics, vol.9, p.46, 2008.
URL : https://hal.archives-ouvertes.fr/inserm-02440272

R. E. Everts, M. R. Band, Z. L. Liu, C. G. Kumar, and L. Liu, A 7872 cDNA microarray and its use in bovine functional genomics, Vet Immunol Immunopathol, vol.105, pp.235-245, 2005.

F. Jaffrezic, G. Marot, S. Degrelle, I. Hue, and J. L. Foulley, A structural mixed model for variances in differential gene expression studies, Genet Res, vol.89, pp.19-25, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00697961

S. A. Degrelle, P. Murthi, D. Evain-brion, T. Fournier, and I. Hue, Expression and localization of DLX3, PPARG and SP1 in bovine trophoblast during binucleated cell differentiation, Placenta, vol.32, pp.917-920, 2011.
URL : https://hal.archives-ouvertes.fr/hal-01000203

K. Ushizawa, T. Takahashi, M. Hosoe, K. Kizaki, and K. Hashizume, Characterization and expression analysis of SOLD1, a novel member of the retrotransposon-derived Ly-6 superfamily, in bovine placental villi, PLoS One, vol.4, p.5814, 2009.

K. Ushizawa, T. Takahashi, M. Hosoe, K. Kizaki, and K. Hashizume, Cloning and expression of SOLD1 in ovine and caprine placenta, and their expected roles during the development of placentomes, BMC Dev Biol, vol.10, p.9, 2010.