L. Andronov, SharpViSu: integrated analysis and segmentation of super-resolution microscopy data, Bioinformatics, vol.32, pp.2239-2241, 2016.

L. Andronov, ClusterViSu, a method for clustering of protein complexes by Voronoi tessellation in super-resolution microscopy, Sci. Rep, vol.6, p.24084, 2016.

D. Aquino, Two-color nanoscopy of three-dimensional volumes by 4Pi detection of stochastically switched fluorophores, Nat. Methods, vol.8, pp.353-359, 2011.

J. Arnold, Site-specific cryo-focused ion beam sample preparation guided by 3D correlative microscopy, Biophys. J, vol.110, pp.860-869, 2016.

F. Aurenhammer, Voronoi diagrams-a survey of a fundamental geometric data structure, ACM Comput. Surv, vol.23, pp.345-405, 1991.

D. Baddeley, Visualization of localization microscopy data, Microsc. Microanal, vol.16, pp.64-72, 2010.

C. B. Barber, The quickhull algorithm for convex hulls, ACM Trans. Math. Softw, vol.22, pp.469-483, 1996.

L. Barna, Correlated confocal and super-resolution imaging by VividSTORM, Nat. Protoc, vol.11, pp.163-183, 2016.

M. E. Beheiry and M. Dahan, ViSP: representing single-particle localizations in three dimensions, Nat. Methods, vol.10, pp.689-690, 2013.

E. Betzig, Imaging intracellular fluorescent proteins at nanometer resolution, Science, vol.313, pp.1642-1645, 2006.

M. Ester, A density-based algorithm for discovering clusters in large spatial databases with noise, KDD'96 Proceedings of the Second International Conference on Knowledge Discovery and Data Mining, pp.226-231, 1996.

J. Fö-lling, Fluorescence nanoscopy by ground-state depletion and single-molecule return, Nat. Methods, vol.5, pp.943-945, 2008.

C. Franke, Photometry unlocks 3D information from 2D localization microscopy data, Nat. Methods, vol.14, pp.41-44, 2017.

T. Fukagawa and W. C. Earnshaw, The Centromere: chromatin foundation for the kinetochore machinery, Dev. Cell, vol.30, pp.496-508, 2014.

M. Heilemann, Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes, Angew. Chem. Int. Ed. Engl, vol.47, pp.6172-6176, 2008.

B. Huang, Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy, Science, vol.319, pp.810-813, 2008.

E. Jones, SciPy: open source scientific tools for Python, 2001.

M. F. Juette, Three-dimensional sub-100 nm resolution fluorescence microscopy of thick samples, Nat. Methods, vol.5, pp.527-529, 2008.

M. A. Karreman, Fast and precise targeting of single tumor cells in vivo by multimodal correlative microscopy, J. Cell Sci, vol.129, pp.444-456, 2016.

R. I. Koning, Correlative cryo-fluorescence light microscopy and cryo-electron tomography of Streptomyces, Methods Cell Biol, vol.124, pp.217-239, 2014.

A. Lampe, Multi-colour direct STORM with red emitting carbocyanines, Biol. Cell, vol.104, pp.229-237, 2012.

F. Levet, SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data, Nat. Methods, vol.12, pp.1065-1071, 2015.

Y. Li, Fast, robust and precise 3D localization for arbitrary point spread functions. bioRxiv, p.172643, 2017.

S. Malkusch, Coordinate-based colocalization analysis of single-molecule localization microscopy data, Histochem. Cell Biol, vol.137, pp.1-10, 2012.

N. Olivier, Simple buffers for 3D STORM microscopy, Biomed. Opt. Express, vol.4, pp.885-899, 2013.

I. Orlov, The integrative role of cryo electron microscopy in molecular and cellular structural biology, Biol. Cell, vol.109, pp.81-93, 2017.
URL : https://hal.archives-ouvertes.fr/inserm-02409721

D. M. Owen, Quantitative analysis of three-dimensional fluorescence localization microscopy data, Biophys. J, vol.105, pp.5-07, 2013.

S. V. Pageon, Clus-DoC: a combined cluster detection and colocalization analysis for single-molecule localization microscopy data, Mol. Biol. Cell, 2016.

D. K. Palmer, A 17-kD centromere protein (CENP-A) copurifies with nucleosome core particles and with histones, J. Cell Biol, vol.104, pp.805-815, 1987.

S. R. Pavani, Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function, Proc. Natl. Acad. Sci, vol.106, pp.2995-2999, 2009.

E. F. Pettersen, UCSF Chimera-a visualization system for exploratory research and analysis, J. Comput. Chem, vol.25, pp.1605-1612, 2004.

P. Ramachandran and G. Varoquaux, Mayavi: 3D visualization of scientific data, Comput. Sci. Eng, vol.13, pp.40-51, 2011.
URL : https://hal.archives-ouvertes.fr/inria-00528985

M. A. Ricci, Chromatin fibers are formed by heterogeneous groups of nucleosomes in vivo, Cell, vol.160, pp.1145-1158, 2015.

J. Rossy, Method for co-cluster analysis in multichannel single-molecule localisation data, Histochem. Cell Biol, vol.141, pp.605-612, 2014.

P. Rubin-delanchy, Bayesian cluster identification in single-molecule localization microscopy data, Nat. Methods, vol.12, pp.1072-1076, 2015.

R. T. Schirra and P. Zhang, Correlative fluorescence and electron microscopy, Curr. Protoc. Cytom, vol.70, pp.1-10, 2014.

M. Schorb, New hardware and workflows for semi-automated correlative cryo-fluorescence and cryo-electron microscopy/tomography, J. Struct. Biol, vol.197, pp.83-93, 2017.

M. Shuaib, HJURP binds CENP-A via a highly conserved N-terminal domain and mediates its deposition at centromeres, Proc. Natl. Acad. Sci, vol.107, pp.1349-1354, 2010.

R. Sibson, A brief description of natural neighbour interpolation, pp.21-35, 1981.

R. E. Thompson, Precise nanometer localization analysis for individual fluorescent probes, Biophys. J, vol.82, pp.2775-2783, 2002.

S. Walt and . Van-der, The NumPy array: a structure for efficient numerical computation, Comput. Sci. Eng, vol.13, pp.22-30, 2011.
URL : https://hal.archives-ouvertes.fr/inria-00564007

D. J. Williamson, Pre-existing clusters of the adaptor Lat do not participate in early T cell signaling events, Nat. Immunol, vol.12, pp.655-662, 2011.

P. Winckler, Identification and super-resolution imaging of ligand-activated receptor dimers in live cells, Sci. Rep, vol.3, p.2387, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00909281

G. Wolff, Towards correlative super-resolution fluorescence and electron cryo-microscopy, Biol. Cell, vol.108, pp.245-258, 2016.