Next-generation sequencing technologies in diagnostic virology, J Clin Virol, vol.58, pp.346-50, 2013. ,
Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases, J Infect, vol.76, pp.225-265, 2018. ,
Evaluation and improvement of real-time PCR assays targeting lytA, ply, and psaA genes for detection of pneumococcal DNA, J Clin Microbiol, vol.45, pp.2460-2466, 2007. ,
rickettsia, and leptospira pathogens as causes of CNS infections in Laos: a prospective study, Lancet Glob Health, vol.3, issue.14, p.70289, 2015. ,
Revisiting management of central nervous system infections in Southeast Asia ,
Francisella tularensis ssp. holarctica in ringtail possums, Australia. Emerg Infect Dis, vol.23, pp.1198-201, 2017. ,
Hepatitis B virus compartmentalization in the cerebrospinal fluid of HIV-infected patients, Clin Microbiol Infect Off Publ Eur Soc Clin Microbiol Infect Dis, vol.21, p.387, 2015. ,
Hepatitis C virus infects the endothelial cells of the blood-brain barrier, Gastroenterology, vol.142, pp.634-643, 2012. ,
Beyond viruses: clinical profiles and etiologies associated with encephalitis, Clin Infect Dis Off Publ Infect Dis Soc Am, vol.43, pp.1565-77, 2006. ,
Causality in acute encephalitis: defining aetiologies, Epidemiol Infect, vol.138, pp.783-800, 2010. ,
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0, Syst Biol, vol.59, pp.307-328, 2010. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00511784
Clinical and biological insights from viral genome sequencing, Nat Rev Microbiol, vol.15, pp.183-92, 2017. ,
Analysis of the full-length genome of hepatitis B virus in the serum and cerebrospinal fluid of a patient with acute hepatitis B and transverse myelitis, J Clin Virol Off Publ Pan Am Soc Clin Virol, vol.41, pp.301-305, 2008. ,
MAFFT multiple sequence alignment software version 7: improvements in performance and usability, Mol Biol Evol, vol.30, pp.772-80, 2013. ,
Fast gapped-read alignment with bowtie 2, Nat Methods, vol.9, pp.357-366, 2012. ,
High-throughput quantitative analysis of hepatitis B virus DNA in serum using the TaqMan fluorogenic detection system, Hepatol Baltim Md, vol.32, pp.626-635, 2000. ,
RNA sequencing: advances, challenges and opportunities, Nat Rev Genet, vol.12, pp.87-98, 2011. ,
Characterizing the virome of Ixodes ricinus ticks from northern, Europe. Sci Rep, vol.7, 2017. ,
Concurrent infection with murine typhus and scrub typhus in southern Laosthe mixed and the unmixed, PLoS Negl Trop Dis, vol.7, 2013. ,
Contribution of quantitative viral markers to document hepatitis B virus compartmentalization in cerebrospinal fluid during hepatitis B with neuropathies, J Neurovirol, vol.24, pp.769-72, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01862579
Estimations of worldwide prevalence of chronic hepatitis B virus infection: a systematic review of data published between, Lancet Lond Engl, vol.386, issue.15, p.61412, 1965. ,
Metagenomic microbial community profiling using unique clade-specific marker genes, Nat Methods, vol.9, pp.811-815, 2012. ,
Redefining the invertebrate RNA virosphere, Nature, vol.540, pp.539-582, 2016. ,
Evidence of hepatitis E virus breaking through the blood-brain barrier and replicating in the central nervous system, J Viral Hepat, vol.23, pp.930-939, 2016. ,
Hepatitis B surface antigen in spinal fluid, Med Pediatr Oncol, vol.8, pp.115-136, 1980. ,
Viral aetiology of central nervous system infections in adults admitted to a tertiary referral hospital in southern Vietnam over 12 years, PLoS Negl Trop Dis, vol.8, 2014. ,
Hepatitis B virus genotypes: epidemiological and clinical relevance in Asia, Hepatol Int, vol.10, pp.854-60, 2016. ,
The global hepatitis B virus genotype distribution approximated from available genotyping data, Genes, vol.9, 2018. ,
RNA-Seq: a revolutionary tool for transcriptomics, Nat Rev Genet, vol.10, pp.57-63, 2009. ,
, World Health Organisation. WHO-recommended standards for surveillance of selected vaccine-preventable diseases, vol.01, pp.1-51, 2003.
, World Health Organization, World Health Organization, Global Hepatitis Programme, Global hepatitis report, 2017.
Comparisons of presentations and outcomes of cryptococcal meningitis between patients with and without hepatitis B virus infection, Int J Infect Dis IJID Off Publ Int Soc Infect Dis, vol.20, pp.31-37, 2014. ,