G. L. Campbell, S. L. Hills, and M. Fischer, Estimated global incidence of Japanese encephalitis: a systematic review, Bull World Health Organ, vol.89, pp.774-774, 2011.

J. P. Caldwell, L. H. Chen, and D. H. Hamer, Evolving epidemiology of Japanese encephalitis: implications for vaccination, Curr Infect Dis Rep, vol.20, p.30, 2018.

E. Simon-loriere, F. O. Prot, and M. , Autochthonous Japanese encephalitis with yellow fever coinfection in Africa, N Engl J Med, vol.376, pp.1483-1488, 2017.
URL : https://hal.archives-ouvertes.fr/pasteur-02003897

J. D. Heffelfinger, X. Li, and N. Batmunkh, Japanese encephalitis surveillance and immunization -Asia and Western Pacific Regions, MMWR Morb Mortal Wkly Rep, vol.66, pp.579-83, 2016.

T. Bharucha, O. Sengvilaipaseuth, and M. Vongsouvath, Development of an improved RT-qPCR assay for detection of Japanese encephalitis virus (JEV) RNA including a systematic review and comprehensive comparison with published methods, PLoS One, vol.13, p.194412, 2018.
URL : https://hal.archives-ouvertes.fr/inserm-02375498

J. S. Robinson, D. Featherstone, and R. Vasanthapuram, Evaluation of three commercially available Japanese encephalitis virus IgM enzyme-linked immunosorbent assays, Am J Trop Med Hyg, vol.83, pp.1146-55, 2010.

A. Khalakdina, S. K. Shrestha, and S. Malla, Field evaluation of commercial immunoglobulin M antibody capture ELISA diagnostic tests for the detection of Japanese encephalitis virus infection among encephalitis patients in Nepal, Int J Infect Dis, vol.14, issue.3, pp.79-84, 2010.

A. Dubot-pérès, O. Sengvilaipaseuth, and A. Chanthongthip, How many patients with anti-JEV IgM in cerebrospinal fluid really have Japanese encephalitis?, Lancet Infect Dis, vol.15, pp.1376-1383, 2015.

T. Bharucha, O. Sengvilaipaseuth, and M. Seephonelee, Detection of Japanese encephalitis virus RNA in human throat samples in Laos -a pilot study, Sci Rep, vol.8, p.8018, 2018.
URL : https://hal.archives-ouvertes.fr/pasteur-01824043

A. C. Andries, V. Duong, and S. Ly, Value of routine dengue diagnostic tests in urine and saliva specimens, PLoS Negl Trop Dis, vol.9, p.4100, 2015.
URL : https://hal.archives-ouvertes.fr/pasteur-01738738

A. C. Gourinat, O. O'connor, and E. Calvez, Detection of Zika virus in urine, Emerg Infect Dis, vol.21, pp.84-90, 2015.
URL : https://hal.archives-ouvertes.fr/pasteur-01114781

A. Nagy, E. Bán, and O. Nagy, Detection and sequencing of West Nile virus RNA from human urine and serum samples during the 2014 seasonal period, Arch Virol, vol.161, pp.1797-806, 2016.

L. Barzon, M. Pacenti, and E. Franchin, Excretion of West Nile virus in urine during acute infection, J Infect Dis, vol.208, pp.1086-92, 2013.

P. P. Mortimer, Urine-based viral diagnostics: an innovation in waiting, Rev Med Virol, vol.25, pp.203-207, 2015.

P. P. Mortimer and J. V. Parry, Non-invasive virological diagnosis: are saliva and urine specimens adequate substitutes for blood?, Rev Med Virol, vol.1, pp.73-81, 1991.

L. Turtle and T. Solomon, Japanese encephalitis -the prospects for new treatments, Nat Rev Neurol, vol.14, pp.298-313, 2018.

H. Zhao, Y. G. Wang, and Y. Q. Deng, Japanese encephalitis virus RNA not detected in urine, Clin Infect Dis, vol.57, pp.157-165, 2013.

N. Mai, N. H. Phu, and L. Nhu, Central nervous system infection diagnosis by next-generation sequencing: a glimpse into the future?, Open Forum Infect Dis, vol.4, 2017.

G. Huang, S. Y. Tio, and L. Caly, Prolonged detection of Japanese encephalitis virus in urine and whole blood in a returned short-term traveler, Open Forum Infect Dis, vol.4, 2017.

F. Aubry, M. Vongsouvath, and A. Nougairede, Complete genome of a genotype I Japanese encephalitis virus isolated from a patient with encephalitis in Vientiane, Genome Announc, vol.1, pp.157-169, 2013.

L. Ninove, A. Nougairede, and C. Gazin, RNA and DNA bacteriophages as molecular diagnosis controls in clinical virology: a comprehensive study of more than 45,000 routine PCR tests, PLoS One, vol.6, p.16142, 2011.

, World Health Organization. Regional Office for the Western Pacific, Training Report Fourth Hands-on Training Workshop on the Laboratory Diagnosis of Japanese Encephalitis. Osong; Manila : WHO Regional Office for the Western Pacific, 2014.

B. W. Johnson, C. H. Goodman, Y. Jee, and D. A. Featherstone, Differential diagnosis of Japanese encephalitis virus infections with the Inbios JE Detect? and DEN Detect? MAC-ELISA kits, Am J Trop Med Hyg, vol.94, pp.820-828, 2016.

J. Brassard, K. Seyer, and A. Houde, Concentration and detection of hepatitis A virus and rotavirus in spring water samples by reverse transcription-PCR, J Virol Methods, vol.123, pp.163-172, 2005.

A. C. Andries, V. Duong, and S. Ly, Value of routine dengue diagnostic tests in urine and saliva specimens, PLoS Negl Trop Dis, vol.9, p.4100, 2015.
URL : https://hal.archives-ouvertes.fr/pasteur-01738738

T. Lu, Y. Han, and R. Zhang, Quantitative detection of hepatitis C virus RNA in urine of patients with chronic hepatitis C using a novel real-time PCR assay, J Med Virol, vol.91, pp.115-138, 2019.

S. K. Tan, M. K. Sahoo, and S. B. Milligan, Stability of Zika virus in urine: specimen processing considerations and implications for the detection of RNA targets in urine, J Virol Methods, vol.248, pp.66-70, 2017.

R. Gorchakov, R. M. Berry, and S. M. Patel, Optimizing PCR detection of Zika virus from various body fluids, Am J Trop Med Hyg, vol.100, issue.2, pp.427-460, 2019.

M. E. Ricklin, O. García-nicolás, and D. Brechbühl, Vector-free transmission and persistence of Japanese encephalitis virus in pigs, Nat Commun, vol.7, p.10832, 2016.