The hallmarks of cancer, Cell, vol.100, issue.1, pp.81683-81692, 2000. ,
The hallmarks of cancer: the next generation, Cell, vol.144, pp.646-674, 2011. ,
Somatic mutations affect key pathways in lung adenocarcinoma, Nature, vol.455, issue.7216, pp.1069-1075, 2008. ,
Frequent mutation of histone modifying genes in non-Hodgkin lymphoma, Nature, vol.476, issue.7360, pp.298-303, 2012. ,
EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy, Science, vol.304, issue.5676, pp.1947-1500, 2004. ,
The cell: a molecular approach, 2000. ,
Genetic mechanisms of tumor suppression by the human p53 gene, Science, vol.250, issue.4987, pp.1576-1580, 1990. ,
Role of KRAS and BRAF gene mutations in mucinous ovarian carcinoma, Gynecol Oncol, pp.378-381, 2003. ,
The neu oncogene: an erb-B-related gene encoding an 185,000-M tumor antigen, Nature, vol.312, pp.513-516, 1984. ,
Trastuzumab-mechanism of action and use in clinical practice, N Engl J Med, vol.357, issue.1, pp.39-51, 2007. ,
A census of human cancer genes, Nat Rev Cancer, vol.4, pp.177-183, 2004. ,
The Cancer Genome Atlas Pan-Cancer Analysis Project Nature Genet, vol.45, pp.1113-1120, 2013. ,
International Cancer Genome Consortium Data Portal-a one-stop shop for cancer genomics data, Database (Oxford), 2011. ,
COSMIC: somatic cancer genetics at high-resolution, Nucleic Acids Res, vol.45, pp.777-783, 2017. ,
, Cancer Genome Landscapes. Science, vol.339, issue.6127, pp.1546-1558, 2013.
Mutational heterogeneity in cancer and the search for new cancer associated genes, Nature, vol.499, pp.214-218, 2013. ,
, The Cancer Genome Atlas Research Network Comprehensive genomic characterization of squamous cell lung cancers, Nature, vol.7417, pp.519-52, 2012.
Signatures of mutational processes in human cancer, Nature, vol.500, pp.415-421, 2013. ,
Identifying mutational significance in cancer genomes, Genome Res, vol.22, issue.8, pp.1589-1598, 2012. ,
Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers, Mol Syst Biol, vol.9, p.637, 2013. ,
Discovery and saturation analysis of cancer genes across 21 tumor types, Nature, vol.505, issue.7484, pp.495-501, 2014. ,
Functional impact bias reveals cancer drivers, Nucleic Acids Res, vol.40, issue.21, 2012. ,
DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer, Genome Biol, vol.13, issue.12, p.124, 2012. ,
Comprehensive characterization of cancer driver genes and mutations, Cell, vol.173, pp.371-385, 2018. ,
DriverDBv2: a database for human cancer driver gene research, Nucleic Acids Res, vol.44, issue.D1, pp.975-984, 2016. ,
Cumulative haploinsufficiency and triplosensitivity drive aneuploidy patterns and shape the cancer genome, Cell, vol.155, issue.4, pp.948-962, 2013. ,
DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes, Genome Med, vol.6, issue.6, p.44, 2014. ,
Evaluating the evaluation of cancer driver genes, Proc Natl Acad Sci U S A, vol.113, issue.50, pp.14330-14335, 2016. ,
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity, Nature, vol.483, issue.7391, pp.603-610, 2012. ,
Kernel methods in computational biology, 2004. ,
Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes, Nature Genetics, vol.47, pp.106-114, 2015. ,
MUFFINN: cancer gene discovery via network analysis of somatic mutation data, Genome Biology, vol.17, p.27333808, 2016. ,
Learning multiple tasks with kernel methods, J Mach Learn Res, vol.6, pp.615-637, 2005. ,
ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples, BMC Bioinformatics, vol.12, issue.1, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00594774
Differential analysis between somatic mutation and germline variation profiles reveals cancer-related genes, Genome Medicine, p.28841835, 2017. ,
MicroRNA-128-3p-mediated depletion of Drosha promotes lung cancer cell migration, Carcinogenesis, vol.39, issue.2, pp.293-304, 2018. ,
The role of Pygo2 for Wnt-catenin signaling activity during intestinal tumor initiation and progression, Oncotarget, vol.7, issue.49, pp.80612-80644, 2016. ,
MEIS1 and MEIS2 Expression and Prostate Cancer Progression: A Role For HOXB13 Binding Partners in Metastatic Disease, Clinical Cancer Research, vol.1, issue.15, pp.3668-80, 2018. ,
Acceleration of chronic myeloproliferation by enforced expression of Meis1 or Meis3 in Icsbp-deficient bone marrow cells, Oncogene, vol.27, issue.27, pp.3865-3874, 2008. ,
Hoxa9 and Meis1 Cooperatively Induce Addiction to Syk Signaling by Suppressing miR-146a in Acute Myeloid Leukemia, Cancer Cell, vol.31, issue.4, pp.549-562, 2017. ,
Fibroblast growth factors (FGFs) in cancer: FGF traps as a new therapeutic approach, Pharmacology and Therapeutics, vol.179, pp.171-187, 2017. ,
Lower Levels of Human MOB3B Are Associated with Prostate Cancer Susceptibility and Aggressive Clinicopathological Characteristics, Journal of Korean Medical Science, vol.30, issue.7, pp.937-979, 2015. ,
The miR-573/apoM/Bcl2A1-dependent signal transduction pathway is essential for hepatocyte apoptosis and hepatocarcinogenesis, Apoptosis, vol.20, issue.10, pp.1321-1358, 2015. ,
Genomic landscape of DNA repair genes in cancer, Oncotarget, vol.7, issue.17, pp.23312-23333, 2016. ,
DNA repair mechanisms in cancer development and therapy, Front Genet, vol.6, 2015. ,
Human exonuclease I is required for 5' and 3' mismatch repair, J Biol Chem, vol.277, pp.13302-13313, 2002. ,
The ERCC1 and ERCC4 (XPF) genes and gene products, Gene, vol.569, issue.2, pp.153-161, 2015. ,
Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways, Nucleic Acids Res, vol.45, issue.22, pp.13043-55, 2017. ,
SOX9 activity is induced by oncogenic Kras to affect MDC1 and MCMs expression in pancreatic cancer, Oncogene, vol.37, issue.7, pp.912-935, 2018. ,
PD-1 and cancer: molecular mechanisms and polymorphisms, Immunogenetics, vol.70, issue.2, pp.73-86, 2018. ,
G9a drives hypoxia-mediated gene repression for breast cancer cell survival and tumorigenesis, Proceedings of National Academy of Sciences of United States of America, vol.114, pp.7077-82, 2017. ,
Cancer-associated mucins: role in immune modulation and metastasis. Cancer and Metastasis Reviews, 2019. ,
Elucidating the cancer-specific genetic alteration spectrum of glioblastoma derived cell lines from whole exome and RNA sequencing, Oncotarget, vol.6, issue.41, pp.43452-71, 2015. ,
GALNT5 uaRNA promotes gastric cancer progression through its interaction with HSP90, Oncogene, vol.1, 2018. ,
Integrated analysis of dysregulated long noncoding RNAs/microRNAs/mRNAs in metastasis of lung adenocarcinoma, Journal of Translational Medicine, vol.27, issue.1, p.372, 2018. ,
Cancer-testis gene PIWIL1 promotes cell proliferation, migration, and invasion in lung adenocarcinoma, Cancer Med, vol.7, issue.1, pp.157-166, 2018. ,
Decreased expression levels of PIWIL1, PIWIL2, and PIWIL4 are associated with worse survival in renal cell carcinoma patients, OncoTargets and Therapy, vol.9, pp.217-239, 2016. ,
Loss of sorting nexin 5 stabilizes internalized growth factor receptors to promote thyroid cancer progression, Journal of Pathology, vol.243, issue.3, pp.342-353, 2017. ,
The effect of centromere protein U silencing by lentiviral mediated RNA interference on the proliferation and apoptosis of breast cancer, Oncology Letters, vol.16, issue.5, pp.6721-6729, 2018. ,
Targeting FXYD2 by cardiac glycosides potently blocks tumor growth in ovarian clear cell carcinoma, Oncotarget, vol.7, issue.39, pp.62925-62963, 2016. ,
Annexin A9 promotes invasion and metastasis of colorectal cancer and predicts poor prognosis, Journal of Molecular Medicine, vol.41, issue.4, pp.2185-92, 2018. ,
Notch signaling: switching an oncogene to a tumor suppressor, Blood, vol.123, issue.16, pp.2451-2460, 2014. ,
Cdx1 and Cdx2 350 function as tumor suppressors, J. Biol. Chem, vol.289, issue.48, pp.33343-54, 2014. ,
A comprehensive genome-wide analysis of the long noncoding RNA 353 expression profile in metastatic lymph nodes of oral mucosal melanoma, Gene, vol.675, pp.44-53, 2018. ,
The genetic landscape of paediatric de novo acute 356 myeloid leukaemia as defined by single nucleotide polymorphism array and exon 357 sequencing of 100 candidate genes, Br J Haematol, vol.174, issue.2, pp.292-301, 2016. ,
Identification of putative pathogenic microRNA and its downstream targets 361 in anaplastic lymphoma kinase-negative anaplastic large cell lymphoma, Hum. Pathol, vol.45, issue.10, 1995. ,
PRACTICAL Consortium et al. Fine-mapping the 2q37 and 17q11.2-q22 loci for novel genes 365 and sequence variants associated with a genetic predisposition to prostate cancer, Int. J. Cancer, vol.136, issue.10, pp.2316-2343, 2015. ,
MiR-1180 promoted the proliferation of hepatocellular carcinoma cells by 373 repressing TNIP2 expression, Biomed. Pharmacother, vol.79, pp.315-335, 2016. ,
Identification of constrained cancer driver genes based on mutation timing, PLoS Comput Biol, vol.11, issue.1, p.1004027, 2015. ,
Support vector method for novelty detection, Mach Learn Interpret Neuroimaging, pp.582-588, 1999. ,
Consistency and convergence rates of one-class SVMs and related algorithms, J. Mach. Learn. Res, vol.7, pp.817-54, 2006. ,
Diffusion kernels on graphs and other discrete input spaces, Proc Int Conf Mach Learn, vol.3, pp.315-322, 2002. ,
Network propagation: a universal amplifier of genetic associations, Nature Rev Genet, 2017. ,
Human Protein Reference Database-2009 update, Nucleic Acids Res, vol.37, pp.767-72, 2009. ,
kernlab-An S4 Package for Kernel Methods in R, J Stat Softw, pp.11-20, 2004. ,