F. Abdulkarim and D. Hughes, Homologous recombination between the tuf genes of Salmonella typhimurium, J Mol Biol, vol.260, pp.506-522, 1996.

J. A. Arjan, M. Visser, C. W. Zeyl, P. J. Gerrish, J. L. Blanchard et al., Diminishing returns from mutation supply rate in asexual populations, Science, vol.283, pp.404-406, 1999.

S. M. Avery and S. Buncic, Escherichia coli O157 diversity with respect to survival during drying on concrete, J Food Prot, vol.66, pp.780-786, 2003.

A. Benito, G. Ventoura, M. Casadei, T. Robinson, and B. Mackey, Variation in resistance of natural isolates of Escherichia coli O157 to high hydrostatic pressure, mild heat, and other stresses, Appl Environ Microbiol, vol.65, pp.1564-1569, 1999.

R. Bijlsma and V. Loeschcke, Environmental Stress, Adaptation, and Evolution. Basel: Birkhäuser-Verlag, 1997.

I. Bjedov, O. Tenaillon, B. Gérard, V. Souza, E. Denamur et al., Stress-induced mutagenesis in bacteria, Science, vol.300, pp.1404-1409, 2003.

D. Brégeon, I. Matic, M. Radman, and F. Taddei, Inefficient mismatch repair: genetic defects and down regulation, J Genet, vol.78, pp.21-28, 1999.

J. Courcelle, A. Khodursky, B. Peter, P. O. Brown, and P. C. Hanawalt, Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli, Genetics, vol.158, pp.41-64, 2001.

S. Delmas and I. Matic, Cellular response to horizontally transferred DNA in Escherichia coli is tuned by DNA repair systems, DNA Repair, vol.4, pp.221-229, 2005.

E. Denamur, G. Lecointre, P. Darlu, O. Tenaillon, C. Acquaviva et al., Evolutionary implications of the frequent horizontal transfer of mismatch repair genes, Cell, vol.103, pp.711-721, 2000.

G. Feng, H. C. Tsui, and M. E. Winkler, Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells, J Bacteriol, vol.178, pp.2388-2396, 1996.

A. R. Fernandez-de-henestrosa, T. Ogi, S. Aoyagi, D. Chafin, J. J. Hayes et al., Identification of additional genes belonging to the LexA regulon in Escherichia coli, Mol Microbiol, vol.35, pp.1560-1572, 2000.

D. Frenkiel-krispin, I. Ben-avraham, J. Englander, E. Shimoni, S. G. Wolf et al., Nucleoid restructuring in stationary-state bacteria, Mol Microbiol, vol.51, pp.395-405, 2004.

M. F. Goodman, Error-prone repair DNA polymerases in prokaryotes and eukaryotes, Annu Rev Biochem, vol.71, pp.17-50, 2002.

R. Hengge-aronis, The general stress response in Escherichia coli, Bacterial Stress Responses, pp.161-178, 2000.

R. Hengge-aronis, Signal transduction and regulatory mechanisms involved in control of the sigma (S) (RpoS) subunit of RNA polymerase, Microbiol Mol Biol Rev, vol.66, pp.373-395, 2002.

G. W. Huisman, D. A. Siegele, M. M. Zambrano, R. Kolter, F. C. Neidhart et al., Morphological and physiological changes during stationary phase, In Escherichia coli and Salmonella: Cellular and Molecular Biology, vol.2, pp.1672-1682, 1996.

S. Kim, G. Maenhaut-michel, M. Yamada, Y. Yamamoto, K. Matsui et al., Multiple pathways for SOS-induced mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA, Proc Natl Acad Sci, vol.94, pp.13792-13797, 1997.

T. King, A. Ishihama, A. Kori, and T. Ferenci, A regulatory trade-off as a source of strain variation in the species Escherichia coli, J Bacteriol, vol.186, pp.5614-5620, 2004.

S. Lacour and P. Landini, SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences, J Bacteriol, vol.186, pp.7186-9715, 2004.

J. C. Layton and P. L. Foster, Error-prone DNA polymerase IV is controlled by the stress-response sigma factor, RpoS. Escherichia coli. Mol Microbiol, vol.50, pp.549-561, 2003.

B. Li, H. C. Tsui, J. E. Leclerc, M. Dey, M. E. Winkler et al., Molecular analysis of mutS expression and mutation in natural isolates of pathogenic Escherichia coli, Microbiology, vol.149, pp.1323-3131, 2003.

G. R. Liu, K. Edwards, A. Eisenstark, Y. M. Fu, W. Q. Liu et al., Genomic diversification among archival strains of Salmonella enterica serovar typhimurium LT7, J Bacteriol, vol.185, pp.2131-2142, 2003.

P. C. Loewen, B. Hu, J. Strutinsky, and R. Sparling, Regulation in the rpoS regulon of Escherichia coli, Can J Microbiol, vol.44, pp.707-717, 1998.

M. J. Lombardo, I. Aponyi, and S. M. Rosenberg, General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli, Genetics, vol.166, pp.669-680, 2004.

G. J. Mckenzie, P. L. Lee, M. J. Lombardo, P. J. Hastings, and S. M. Rosenberg, SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification, Mol Cell, vol.7, pp.571-579, 2001.

A. Martinez and R. Kolter, Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps, J Bacteriol, vol.179, pp.5188-5194, 1997.

S. Nair and S. E. Finkel, Dps protects cells against multiple stresses during stationary phase, J Bacteriol, vol.186, pp.4192-4198, 2004.

L. Notley-mcrobb, T. King, and T. Ferenci, ) rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses, J Bacteriol, vol.184, pp.806-811, 2002.

T. Nystrom, Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition?, Mol Microbiol, vol.54, pp.855-862, 2004.

C. L. Patten, M. G. Kirchhof, M. R. Schertzberg, R. A. Morton, and H. E. Schellhorn, Microarray analysis of RpoS-mediated gene expression, 2004.

, Mol Genet Genomics, vol.272, pp.580-591

M. A. Petit, J. Dimpfl, M. Radman, and H. Echols, Control of chromosomal rearrangements in E. coli by the mismatch repair system, Genetics, vol.129, pp.327-332, 1991.

A. I. Prieto, F. Ramos-morales, and J. Casadesus, Bile-induced DNA damage in Salmonella enterica, Genetics, vol.168, pp.1787-1794, 2004.

M. Robey, A. Benito, R. H. Hutson, C. Pascual, S. F. Park et al., Variation in resistance to high hydrostatic pressure and rpoS heterogeneity in natural isolates of Escherichia coli O157:H7, Appl Environ Microbiol, vol.67, pp.4901-4907, 2001.

C. Saint-ruf, F. Taddei, and I. Matic, Stress and survival of aging Escherichia coli rpoS colonies, Genetics, vol.168, pp.541-546, 2004.
URL : https://hal.archives-ouvertes.fr/inserm-02177257

M. J. Schofield and P. Hsieh, DNA mismatch repair: molecular mechanisms and biological function, Annu Rev Microbiol, vol.57, pp.579-608, 2003.

O. Tenaillon, F. Taddei, M. Radman, and I. Matic, Second order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation, Res Microbiol, vol.152, pp.11-16, 2001.

O. Tenaillon, E. Denamur, and I. Matic, Evolutionary significance of stress-induced mutagenesis in bacteria, Trends Microbiol, vol.12, pp.264-270, 2004.

H. T. Tsui, G. Feng, and M. E. Winkler, Negative regulation of mutS and mutH repair gene expression by the Hfq and RpoS global regulators of Escherichia coli K-12, J Bacteriol, vol.179, pp.7476-7487, 1997.

G. C. Walker, B. T. Smith, and M. D. Sutton, The SOS response to DNA damage, Bacterial Stress Responses, pp.131-144, 2000.

S. R. Waterman and P. L. Small, Characterization of the acid resistance phenotype and rpoS alleles of shigalike toxin-producing Escherichia coli, Infect Immun, vol.64, pp.2808-2811, 1996.

H. Weber, T. Polen, J. Heuveling, V. F. Wendisch, and R. Hengge, Genome-wide analysis of the general stress response network in Escherichia coli: sigmaSdependent genes, promoters, and sigma factor selectivity, J Bacteriol, vol.187, pp.1591-1603, 2005.

J. Wyrzykowski and M. R. Volkert, The Escherichia coli methyl-directed mismatch repair system repairs base pairs containing oxidative lesions, J Bacteriol, vol.185, pp.1701-1704, 2003.

H. Yang, E. Wolff, M. Kim, A. Diep, and J. H. Miller, Identification of mutator genes and mutational pathways in Escherichia coli using a multicopy cloning approach, Mol Microbiol, vol.53, pp.283-295, 2004.

J. Zhao and M. E. Winkler, Reduction of GC?TA transversion mutation by overexpression of MutS in Escherichia coli K-12, J Bacteriol, vol.182, pp.5025-5028, 2000.