Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences, Cell, vol.27, issue.2, pp.299-308, 1981. ,
Regulation of inducible and tissue-specific gene expression. Science, vol.236, p.3296191, 1987. ,
Review Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution, Cell, vol.167, issue.5, p.27863239, 2016. ,
Using transgenic reporter assays to functionally characterize enhancers in animals. Genomics, vol.106, p.26072435, 2015. ,
DOI : 10.1016/j.ygeno.2015.06.007
URL : https://manuscript.elsevier.com/S0888754315300124/pdf/S0888754315300124.pdf
Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor, Nat Genet, vol.43, issue.4, p.21423180, 2011. ,
Functional and topological characteristics of mammalian regulatory domains, Genome Res, vol.24, issue.3, p.24398455, 2014. ,
Autoregulatory feedback controls sequential action of cis-regulatory modules at the brinker locus, Dev Cell, vol.26, issue.5, p.24044892, 2013. ,
Pioneer transcription factors: Establishing competence for gene expression, Genes Dev, vol.25, issue.21, p.22056668, 2011. ,
DOI : 10.1101/gad.176826.111
URL : http://genesdev.cshlp.org/content/25/21/2227.full.pdf
The hierarchy of the 3D genome, Mol Cell, vol.49, issue.5, p.23473598, 2013. ,
Spatial partitioning of the regulatory landscape of the X-inactivation centre, Nature, vol.485, issue.7398, p.22495304, 2012. ,
Topological domains in mammalian genomes identified by analysis of chromatin interactions, Nature, vol.485, issue.7398, p.22495300, 2012. ,
A gene encoding a protein with zinc fingers is activated during G0/G1 transition in cultured cells, EMBO J, vol.7, issue.1, p.3129290, 1988. ,
Krox20 hindbrain cis-regulatory landscape: interplay between multiple long-range initiation and autoregulatory elements, Development, vol.133, issue.7, p.16495311, 2006. ,
DOI : 10.1242/dev.02289
URL : http://dev.biologists.org/content/133/7/1253.full.pdf
Patterning the vertebrate neuraxis, Science, vol.274, issue.5290, p.8895453, 1996. ,
Disruption of Krox-20 results in alteration of rhombomeres 3 and 5 in the developing hindbrain, Cell, vol.75, issue.6, p.7903221, 1993. ,
Segmental and neuronal architecture of the hindbrain of Krox-20 mouse mutants, Development, vol.124, issue.6, p.9102308, 1997. ,
Hindbrain patterning: Krox20 couples segmentation and specification of regional identity, Development, vol.128, issue.24, p.11748134, 2001. ,
Dissection of a Krox20 positive feedback loop driving cell fate choices in hindbrain patterning, Mol Syst Biol, vol.9, issue.690, 2013. ,
Hindbrain patterning requires fine-tuning of early krox20 transcription by Sprouty 4. Development, vol.138, p.21177344, 2011. ,
Molecular dissection of segment formation in the developing hindbrain, Development, vol.142, issue.1, p.25516974, 2015. ,
Rostral hindbrain patterning involves the direct activation of a Krox20 transcriptional enhancer by Hox/Pbx and Meis factors, Development, vol.135, p.18787068, 1920. ,
Krox-20 is a key regulator of rhombomere-specific gene expression in the developing hindbrain, Mech Dev, vol.65, issue.1-2, p.9256343, 1997. ,
Expression pattern of a Krox-20/Cre knock-in allele in the developing hindbrain, bones, and peripheral nervous system, Genesis, vol.26, issue.2, p.10686605, 2000. ,
Robust 4C-seq data analysis to screen for regulatory DNA interactions, Nat Methods, vol.9, issue.10, p.22961246, 2012. ,
Progressive spatial restriction of Sek-1 and Krox-20 gene expression during hindbrain segmentation, Dev Biol, vol.173, issue.1, p.8575627, 1996. ,
DOI : 10.1006/dbio.1996.0004
URL : https://doi.org/10.1006/dbio.1996.0004
High-Resolution Profiling of Histone Methylations in the Human Genome, Cell, vol.129, issue.4, p.17512414, 2007. ,
Charting histone modifications and the functional organization of mammalian genomes, Nat Rev Genet, vol.12, issue.1, p.21116306, 2011. ,
Neural crest patterning: autoregulatory and crest-specific elements co-operate for Krox20 transcriptional control, Development, vol.130, issue.5, p.12538520, 2003. ,
Segmental expression of the EphA4 (Sek-1) receptor tyrosine kinase in the hindbrain is under direct transcriptional control of Krox-20, Development, vol.125, issue.3, p.9425139, 1998. ,
Comparative expression of the mouse Sox1, Sox2 and Sox3 genes from pregastrulation to early somite stages, Mech Dev, vol.86, issue.1-2, p.10446282, 1999. ,
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position, Nat Methods, vol.10, issue.12, p.24097267, 2013. ,
Molecular dissection of segment formation in the developing hindbrain, Development, vol.142, issue.1, p.25516974, 2015. ,
vhnf1 and Fgf signals synergize to specify rhombomere identity in the zebrafish hindbrain, Development, vol.130, issue.16, p.12835397, 2003. ,
The mouse segmentation gene kr encodes a novel basic domain-leucine zipper transcription factor, Cell, vol.79, issue.6, p.8001130, 1994. ,
Reveals a Hindbrain Ground State, Dev Cell, vol.3, p.12431378, 2002. ,
Meis family proteins are required for hindbrain development in the zebrafish, Development, vol.129, issue.3, p.11830560, 2002. ,
Knockdown of the complete Hox paralogous group 1 leads to dramatic hindbrain and neural crest defects, Development, vol.132, issue.12, p.15930115, 2005. ,
Establishment of hindbrain segmental identity requires signaling by FGF3 and FGF8, Curr Biol, vol.12, issue.13, p.12121619, 2002. ,
FGF signaling controls caudal hindbrain specification through Ras-ERK1/2 pathway, BMC Dev Biol, vol.9, p.61, 2009. ,
DOI : 10.1186/1471-213x-9-61
URL : https://bmcdevbiol.biomedcentral.com/track/pdf/10.1186/1471-213X-9-61
Shadow enhancers as a source of evolutionary novelty, Science, vol.321, issue.5894, p.18772429, 2008. ,
Regulation of Otx2 expression and its functions in mouse forebrain and midbrain, Development, vol.131, issue.14, p.15201224, 2004. ,
Partially Redundant Enhancers Cooperatively Maintain Mammalian Pomc Expression Above a Critical Functional Threshold, PLOS Genet, vol.11, issue.2, p.25671638, 2015. ,
DOI : 10.1371/journal.pgen.1004935
URL : https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1004935&type=printable
Mechanisms of transcriptional precision in animal development, Trends Genet, vol.28, issue.8, p.22513408, 2012. ,
Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness, PLoS Genet, vol.7, issue.11, 2011. ,
Two distinct auto-regulatory loops operate at the PU.1 locus in B cells and myeloid cells, Blood, vol.117, issue.10, p.21239694, 2011. ,
DOI : 10.1182/blood-2010-08-302976
URL : http://www.bloodjournal.org/content/bloodjournal/117/10/2827.full.pdf
Enhancers as non-coding RNA transcription units: recent insights and future perspectives, Nat Rev Genet, vol.17, issue.4, p.26948815, 2016. ,
DOI : 10.1038/nrg.2016.4
Maternally expressed PGK-Cre transgene as a tool for early and uniform activation of the Cre site-specific recombinase, Transgenic Res, vol.7, issue.2, p.9608738, 1998. ,
Krox-20 patterns the hindbrain through both cell-autonomous and non cell-autonomous mechanisms, Genes Dev, vol.15, issue.5, p.11238377, 2001. ,
Segment-specific expression of a zinc-finger gene in the developing nervous system of the mouse, Nature, vol.337, issue.6206, p.2915691, 1989. ,
An Eph-related receptor protein tyrosine kinase gene segmentally expressed in the developing mouse hindbrain. Oncogene, vol.7, p.1281307, 1992. ,
Hox and Pbx Factors Control Retinoic Acid Synthesis during Hindbrain Segmentation, Dev Cell, vol.20, issue.4, p.21497760, 2011. ,
DOI : 10.1016/j.devcel.2011.03.011
URL : https://doi.org/10.1016/j.devcel.2011.03.011
A cloud computing-based framework facilitating high throughput sequencing analyses, Bioinformatics, vol.28, issue.11, p.22492314, 2012. ,
Ultrafast universal RNAseq aligner, Bioinformatics, vol.29, issue.1, p.23104886, 2013. ,
DOI : 10.1093/bioinformatics/bts635
URL : https://academic.oup.com/bioinformatics/article-pdf/29/1/15/17101697/bts635.pdf
DeepTools: A flexible platform for exploring deepsequencing data, Nucleic Acids Res, vol.42, issue.W1, pp.187-91, 2014. ,
Determination of High-Resolution 3D Chromatin Organization Using Circular Chromosome Conformation Capture (4C-seq), pp.223-264, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01412298
HTSstation: A web application and open-access libraries for high-throughput sequencing data analysis, PLoS One, vol.9, issue.1, 2014. ,
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects, Genome Res, vol.24, issue.12, p.25079858, 2014. ,
DOI : 10.1101/gr.177881.114
URL : http://genome.cshlp.org/content/24/12/2033.full.pdf
A map of the cis-regulatory sequences in the mouse genome, Nature, vol.488, issue.7409, pp.116-136, 2012. ,