Funding acquisition: Nicolas Leulliot, Contributions Conceptualization: Clément Joret, Célia Plisson ,
The post-transcriptional steps of eukaryotic ribosome biogenesis, Cell Mol Life Sci, vol.65, pp.2334-2359, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00309051
Ribosome biogenesis in the yeast Saccharomyces cerevisiae, Genetics, vol.195, p.24190922, 2013. ,
DOI : 10.1534/genetics.113.153197
URL : http://www.genetics.org/content/195/3/643.full.pdf
A Puzzle of Life: Crafting Ribosomal Subunits, Trends Biochem Sci, vol.42, p.28579196, 2017. ,
DOI : 10.1016/j.tibs.2017.05.005
URL : http://doc.rero.ch/record/288894/files/kre_pfc.pdf
Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae, Mol Cell, vol.16, p.15610737, 2004. ,
Yeast pre-rRNA processing and modification occur cotranscriptionally, Mol Cell, vol.37, p.20347423, 2010. ,
Npa1p, a component of very early pre-60S ribosomal particles, associates with a subset of small nucleolar RNPs required for peptidyl transferase center modification, Mol Cell Biol, vol.24, p.15226434, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-00022383
High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast, Nat Commun, vol.8, p.28959008, 2017. ,
DOI : 10.1038/s41467-017-00761-8
URL : https://www.nature.com/articles/s41467-017-00761-8.pdf
The structure of the eukaryotic ribosome at 3.0 A resolution, Science, vol.334, p.22096102, 2011. ,
Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes, Nature, vol.534, p.27251291, 2016. ,
A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains, Genes Dev, vol.28, p.24449272, 2014. ,
Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes, Cell, vol.171, p.29245012, 2017. ,
DOI : 10.1016/j.cell.2017.11.039
URL : http://www.cell.com/article/S0092867417314290/pdf
Modular assembly of the nucleolar pre-60S ribosomal subunit, Nature, vol.556, p.29512650, 2018. ,
DOI : 10.1038/nature26156
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6118127
Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate, Protein Cell, 2018. ,
The long unwinding road of RNA helicases, Mol Cell, vol.27, p.17679086, 2007. ,
Yeast and human RNA helicases involved in ribosome biogenesis: current status and perspectives, Biochim Biophys Acta, vol.1829, p.23357782, 2013. ,
Cofactor-dependent specificity of a DEAD-box protein, Proc Natl Acad Sci, vol.110, p.23630256, 2013. ,
DOI : 10.1073/pnas.1302577110
URL : http://europepmc.org/articles/pmc3718167?pdf=render
Characterization of Saccharomyces cerevisiae Npa2p (Urb2p) reveals a low-molecular-mass complex containing Dbp6p, Npa1p (Urb1p), Nop8p, and Rsa3p involved in early steps of 60S ribosomal subunit biogenesis, vol.27, p.17145778, 2007. ,
The putative RNA helicase Dbp6p functionally interacts with Rpl3p, Nop8p and the novel trans-acting Factor Rsa3p during biogenesis of 60S ribosomal subunits in Saccharomyces cerevisiae, Genetics, vol.166, p.15126390, 2004. ,
Dbp6p is an essential putative ATP-dependent RNA helicase required for 60S-ribosomal-subunit assembly in Saccharomyces cerevisiae, Mol Cell Biol, vol.18, p.9528757, 1998. ,
Npa1p is an essential trans-acting factor required for an early step in the assembly of 60S ribosomal subunits in Saccharomyces cerevisiae, RNA, vol.10, p.15208443, 2004. ,
The essential nucleolar yeast protein Nop8p controls the exosome function during 60S ribosomal subunit maturation, PLoS One, vol.6, p.21747919, 2011. ,
DOI : 10.1371/journal.pone.0021686
URL : https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0021686&type=printable
Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit, Nature, vol.441, p.16738661, 2006. ,
Analysis of the in vivo assembly pathway of eukaryotic 40S ribosomal proteins, Mol Cell, vol.28, p.17996708, 2007. ,
Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs, Proc Natl Acad Sci U S A, vol.106, p.19482942, 2009. ,
Profiling of ribose methylations in RNA by high-throughput sequencing, Angew Chem Int Ed Engl, vol.54, p.25417815, 2015. ,
Illumina-based RiboMethSeq approach for mapping of 2'-O-Me residues in RNA, Nucleic Acids Res, vol.44, p.27302133, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01452312
The complete chemical structure of Saccharomyces cerevisiae rRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9, Nucleic Acids Res, vol.44, p.27325748, 2016. ,
Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae, Nucleic Acids Res, vol.41, p.23209026, 2013. ,
Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes, Nucleic Acids Res, vol.38, pp.3068-3080, 2010. ,
Stepwise assembly of the earliest precursors of large ribosomal subunits in yeast, Nucleic Acids Res, vol.45, p.28402444, 2017. ,
A protein interaction map of the LSU processome, Genes Dev, vol.29, p.25877921, 2015. ,
Interaction network of the ribosome assembly machinery from a eukaryotic thermophile, Protein Sci, vol.26, p.27863450, 2017. ,
Functional analysis of Saccharomyces cerevisiae ribosomal protein Rpl3p in ribosome synthesis, Nucleic Acids Res, vol.35, p.17569673, 2007. ,
Co-translational capturing of nascent ribosomal proteins by their dedicated chaperones, Nat Commun, vol.6, p.7494, 2015. ,
A yeast homolog of chromatin assembly factor 1 is involved in early ribosome assembly, Curr Biol, vol.11, p.11728313, 2001. ,
Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis, Mol Cell, vol.36, p.19941819, 2009. ,
Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly, Mol Cell, vol.52, p.24239293, 2013. ,
DOI : 10.1016/j.molcel.2013.10.017
URL : https://doi.org/10.1016/j.molcel.2013.10.017
Comprehensive mutational analysis of yeast DEXD/H box RNA helicases involved in large ribosomal subunit biogenesis, Mol Cell Biol, vol.26, p.16449635, 2006. ,
Identification of the binding site of Rlp7 on assembling 60S ribosomal subunits in Saccharomyces cerevisiae, RNA, vol.19, p.24129494, 2013. ,
A cluster of ribosome synthesis factors regulate prerRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease, EMBO J, vol.30, p.21811236, 2011. ,
Atomic modeling of the ITS2 ribosome assembly subcomplex from cryo-EM together with mass spectrometry-identified protein-protein crosslinks, Protein Sci, vol.26, p.27643814, 2017. ,
The Rio1p ATPase hinders premature entry into translation of late pre-40S pre-ribosomal particles, Nucleic Acids Res, vol.45, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01608918
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae, Yeast, vol.14, pp.953-961, 1998. ,
DOI : 10.1002/(sici)1097-0061(199807)14:10<953::aid-yea293>3.0.co;2-u
Deciphering correct strategies for multiprotein complex assembly by co-expression: application to complexes as large as the histone octamer, J Struct Biol, vol.175, p.21320604, 2011. ,
Immature small ribosomal subunits can engage in translation initiation in Saccharomyces cerevisiae, EMBO J, vol.29, p.19893492, 2010. ,
DOI : 10.1038/emboj.2009.307
URL : https://hal.archives-ouvertes.fr/hal-00611887