Dynamical behavior of the HIV-1 nucleocapsid protein, J Mol Biol, vol.279, p.9641983, 1998. ,
Determination of the structure of the nucleocapsid protein NCp7 from the human immunodeficiency virus type 1 by 1H NMR, EMBO J, vol.11, p.1639074, 1992. ,
Spatial Proximity of the Hiv-1 Nucleocapsid Protein Zinc Fingers Investigated by Time-Resolved Fluorescence and Fluorescence Resonance Energy-Transfer, Biochemistry, vol.33, p.7918429, 1994. ,
Conformational behaviour of the active and inactive forms of the nucleocapsid NCp7 of HIV-1 studied by 1H NMR, J Mol Biol, vol.235, p.8289249, 1994. ,
Nucleocapsid protein of human immunodeficiency virus as a model protein with chaperoning functions and as a target for antiviral drugs, Adv Pharmacol, vol.48, p.10987096, 2000. ,
Properties, functions, and drug targeting of the multifunctional nucleocapsid protein of the human immunodeficiency virus, Adv Pharmacol, vol.55, p.17586319, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00667232
Mapping of nucleocapsid residues important for HIV-1 genomic RNA dimerization and packaging, Virology, vol.375, pp.592-610, 2008. ,
Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism, Prog Nucleic Acid Res Mol Biol, vol.80, p.16164976, 2005. ,
Features, processing states, and heterologous protein interactions in the modulation of the retroviral nucleocapsid protein function, RNA Biol, vol.7, p.21045549, 2010. ,
Properties and functions of the nucleocapsid protein in virus assembly, RNA Biol, vol.7, p.21157181, 2010. ,
The relationship between HIV-1 genome RNA dimerization, virion maturation and infectivity, Nucleic Acids Res, vol.39, p.21186186, 2011. ,
DOI : 10.1093/nar/gkq1314
URL : https://academic.oup.com/nar/article-pdf/39/8/3404/7192404/gkq1314.pdf
Nucleocapsid protein function in early infection processes, Virus Res, vol.134, pp.39-63, 2008. ,
The ubiquitous nature of RNA chaperone proteins, Prog Nucleic Acid Res Mol Biol, vol.72, p.12206453, 2002. ,
RNA chaperones and the RNA folding problem, J Biol Chem, vol.270, p.7545662, 1995. ,
DOI : 10.1074/jbc.270.36.20871
URL : http://www.jbc.org/content/270/36/20871.full.pdf
Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication, Trends Biochem Sci, vol.23, p.9757830, 1998. ,
Taming free energy landscapes with RNA chaperones, RNA Biol, vol.7, p.21045544, 2010. ,
DOI : 10.4161/rna.7.6.13615
URL : http://europepmc.org/articles/pmc3073327?pdf=render
Flexible nature and specific functions of the HIV-1 nucleocapsid protein, J Mol Biol, vol.410, p.21762801, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00666974
Trans-activation of the 5' to 3' viral DNA strand transfer by nucleocapsid protein during reverse transcription of HIV1 RNA, C R Acad Sci III, vol.316, p.7519118, 1993. ,
During the early phase of HIV-1 DNA synthesis, nucleocapsid protein directs hybridization of the TAR complementary sequences via the ends of their double-stranded stem, J Mol Biol, vol.356, p.16406407, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00129870
Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA, J Virol, vol.71, p.9188585, 1997. ,
Biophysical studies of the nucleic acid chaperone properties of the HIV-1 nucleocapsid protein, RNA Biol, vol.7, p.21045545, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00658927
Role of HIV-1 nucleocapsid protein in HIV-1 reverse transcription, RNA Biol, vol.7, p.21160280, 2010. ,
HIV-1 nucleocapsid protein switches the pathway of transactivation response element RNA/DNA annealing from loop-loop "kissing" to "zipper, J Mol Biol, vol.386, pp.789-801, 2009. ,
Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription, J Biol Chem, vol.269, p.7989315, 1994. ,
Coupled integration of human immunodeficiency virus type 1 cDNA ends by purified integrase in vitro: stimulation by the viral nucleocapsid protein, J Virol, vol.73, p.10400764, 1999. ,
Human immunodeficiency virus type 1 nucleocapsid zinc-finger mutations cause defects in reverse transcription and integration, Virology, vol.353, p.16784767, 2006. ,
Retroviral nucleocapsid domains mediate the specific recognition of genomic viral RNAs by chimeric Gag polyproteins during RNA packaging in vivo, J Virol, vol.69, p.7666546, 1995. ,
Noninfectious human immunodeficiency virus type 1 mutants deficient in genomic RNA, J Virol, vol.64, p.2191147, 1990. ,
Single point mutations in the zinc finger motifs of the human immunodeficiency virus type 1 nucleocapsid alter RNA binding specificities of the gag protein and enhance packaging and infectivity, J Virol, vol.79, p.15919928, 2005. ,
The structural biology of HIV assembly, Curr Opin Struct Biol, vol.18, p.18406133, 2008. ,
Structural biology of HIV, J Mol Biol, vol.285, p.9878383, 1999. ,
Human immunodeficiency virus type 1 nucleocapsid zn (2+) fingers are required for efficient reverse transcription, initial integration processes, and protection of newly synthesized viral DNA, J Virol, vol.77, p.12502862, 2003. ,
DNA condensation by the nucleocapsid protein of HIV-1: a mechanism ensuring DNA protection, Nucleic Acids Res, vol.31, p.12954779, 2003. ,
Revisiting HIV-1 uncoating, Retrovirology, vol.7, p.96, 2010. ,
DOI : 10.1186/1742-4690-7-96
URL : https://hal.archives-ouvertes.fr/hal-02142365
HIV-1 protease and reverse transcriptase control the architecture of their nucleocapsid partner, PLoS One, vol.2, p.17712401, 2007. ,
Transmission electron microscopy reveals an optimal HIV-1 nucleocapsid aggregation with single-stranded nucleic acids and the mature HIV-1 nucleocapsid protein, J Mol Biol, vol.364, p.17020765, 2006. ,
A protein ballet around the viral genome orchestrated by HIV-1 reverse transcriptase leads to an architectural switch: From nucleocapsid-condensed RNA to Vpr-bridged DNA, Virus Res, vol.171, p.23017337, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01101112
Human immunodeficiency virus type 1 nucleocapsid protein nuclear localization mediates early viral mRNA expression, J Virol, vol.76, p.12239321, 2002. ,
DOI : 10.1128/jvi.76.20.10444-10454.2002
URL : https://jvi.asm.org/content/76/20/10444.full.pdf
HIV nuclear import is governed by the phosphotyrosine-mediated binding of matrix to the core domain of integrase, Cell, vol.83, p.7585960, 1995. ,
Dynamic fluorescent imaging of human immunodeficiency virus type 1 gag in live cells by biarsenical labeling, J Virol, vol.79, p.15767407, 2005. ,
Study of complexes of basic dyes with RNA, Biochim Biophys Acta, vol.145, p.6065691, 1967. ,
Purification, characterization and crystallization of the human 80S ribosome, Nucleic Acids Res, vol.42, p.49, 2014. ,
DOI : 10.1093/nar/gkt1404
URL : https://doi.org/10.1093/nar/gkt1404
Raster image correlation spectroscopy in live cells, Nat Protoc, vol.5, pp.1761-1774, 2010. ,
DOI : 10.1038/nprot.2010.122
URL : http://europepmc.org/articles/pmc3089972?pdf=render
Monitoring of the formation and dissociation of polyethylenimine/ DNA complexes by two photon fluorescence correlation spectroscopy, Biophys J, vol.84, p.12609898, 2003. ,
Destabilization of the HIV-1 complementary sequence of TAR by the nucleocapsid protein through activation of conformational fluctuations, J Mol Biol, vol.326, p.12581633, 2003. ,
Two-Photon two-focus fluorescence correlation spectroscopy with a tunable distance between the excitation volumes, J Fluorescence, vol.19, pp.561-565, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00406372
QuickFit 3.0 (status: beta, SVN: 1532) A data evaluation application for biophysics, 2013. ,
Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells, Biophys J, vol.87, p.15339818, 2004. ,
Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy, J Mol Biol, vol.298, p.10788329, 2000. ,
DOI : 10.1006/jmbi.2000.3692
Practical guidelines for dual-color fluorescence cross-correlation spectroscopy, Nat Protoc, vol.2, p.18007619, 2007. ,
DOI : 10.1038/nprot.2007.410
NC-mediated nucleolar localization of retroviral gag proteins, Virus Res, vol.171, p.23036987, 2013. ,
Photosensitizing effects of the tricyclic heteroaromatic cationic dyes Pyronin Y and Toluidine blue O (tolonium chloride), Cancer Res, vol.48, p.3342408, 1988. ,
Cytostatic and cytotoxic properties of pyronin Y: relation to mitochondrial localization of the dye and its interaction with RNA, Cancer Res, vol.46, p.2428484, 1986. ,
Imaging in situ protein-DNA interactions in the cell nucleus using FRET-FLIM, Exp Cell Res, vol.309, pp.390-396, 2006. ,
Fluorescence lifetime imaging microscopy: spatial resolution of biochemical processes in the cell, Trends Cell Biol, vol.9, p.10087617, 1999. ,
Fluorescence resonance energy transfer microscopy of localized protein interactions in the living cell nucleus, Methods, vol.25, p.11558993, 2001. ,
Quantitative imaging of protein interactions in the cell nucleus, Biotechniques, vol.38, p.15786808, 2005. ,
, Fluorescent protein FRET: the good, the bad and the ugly, Cellular Dynamics and Interactions of HIV-1 Nucleocapsid Protein PLOS ONE |, vol.58, p.17764955, 2007.
A flexible approach to the calculation of resonance energy transfer efficiency between multiple donors and acceptors in complex geometries, Biophys J, vol.89, p.16199497, 2005. ,
Immunolabeling artifacts and the need for live-cell imaging, Nat Methods, vol.9, p.22290187, 2012. ,
Selective and nonselective packaging of cellular RNAs in retrovirus particles, J Virol, vol.81, p.17392359, 2007. ,
Mobility measurement by analysis of fluorescence photobleaching recovery kinetics, Biophys J, vol.16, p.786399, 1976. ,
Analysis of receptor oligomerization by FRAP microscopy, Nat Methods, vol.6, p.19234451, 2009. ,
FRAP analysis of binding: proper and fitting, Trends Cell Biology, vol.15, p.15695095, 2005. ,
Anomalous subdiffusion in fluorescence photobleaching recovery: A Monte Carlo study, Biophys J, vol.81, p.11566793, 2001. ,
Measuring fast dynamics in solutions and cells with a laser scanning microscope, Biophys J, vol.89, p.15908582, 2005. ,
Mapping eGFP oligomer mobility in living cell nuclei, PLoS One, vol.4, p.5041, 2009. ,
Biologistics-diffusion coefficients for complete proteome of Escherichia coli, Bioinformatics, vol.28, pp.2971-2978, 2012. ,
Two-photon fluorescence correlation spectroscopy: method and application to the intracellular environment, Biophys J, vol.68, p.7696520, 1995. ,
Fluorescence correlation spectroscopy in living cells, Nat Methods, vol.4, p.17971781, 2007. ,
Fluorescence correlation spectroscopy for the detection and study of single molecules in biology, Bioessays, vol.24, p.12210537, 2002. ,
Molecular dynamics in living cells observed by fluorescence correlation spectroscopy with one-and two-photon excitation, Biophys J, vol.77, p.10512844, 1999. ,
Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure, Biophys J, vol.88, p.15792971, 2005. ,
Hindered diffusion of inert tracer particles in the cytoplasm of mouse 3T3 cells, Proc Natl Acad Sci U S A, vol.84, p.3474634, 1987. ,
Probing the structure of cytoplasm, J Cell Biol, vol.102, p.2423529, 1986. ,
Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus, J Cell Biol, vol.138, p.9214387, 1997. ,
Comment on "Stochastic pathway to anomalous diffusion, Phys Rev A, vol.41, p.9903200, 1990. ,
A biological interpretation of transient anomalous subdiffusion. II. Reaction kinetics, Biophys J, vol.94, p.17905849, 2008. ,
, Molecular Cell Biology, 2000.
First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses, J Mol Biol, vol.254, p.7500330, 1995. ,
Labeling of multiple HIV-1 proteins with the biarsenical-tetracysteine system, PLoS One, vol.6, p.17016, 2011. ,
Human immunodeficiency virus type 1 nucleocapsid protein specifically stimulates Mg2+-dependent DNA integration in vitro, J Virol, vol.71, p.9223522, 1997. ,
Analysis of NCp7-dependent activation of HIV-1 cDNA integration and its conservation among retroviral nucleocapsid proteins, J Mol Biol, vol.329, p.12767826, 2003. ,
URL : https://hal.archives-ouvertes.fr/hal-00314255
Characterization of human immunodeficiency virus type 1 (HIV-1) containing mutations in the nucleocapsid protein at a putative HIV-1 protease cleavage site, Virology, vol.354, p.16904152, 2006. ,
Binding of the HIV-1 nucleocapsid protein to the primer tRNA(3Lys), in vitro, is essentially not specific, J Biol Chem, vol.270, p.7829498, 1995. ,
Recombinant human immunodeficiency virus type 1 nucleocapsid (NCp7) protein unwinds tRNA, J Biol Chem, vol.267, p.1551877, 1992. ,
Global landscape of HIV-human protein complexes, Nature, vol.481, pp.365-370, 2012. ,