, Normalized read counts (RPKM) for each targeted virus (viruses detected with real-time PCR) and for internal quality control (MS2 bacteriophage). c) Coverage plot of targeted viral genomes and internal quality control (MS2 bacteriophage), human, bacteria, viruses, fungi, archea and unknown categories (unassigned reads). b)

A. Aris, Acute Respiratory Infections; Ct: Cycle threshold; EQC: External Quality Control; HCL: Hospices Civils de Lyon; IQC: Internal Quality Control; mNGS: metagenomic Next-Generation Sequencing

, RPKM: Reads per kilobase of virus reference sequence per million mapped reads Laboratoire de Virologie, INSERM UMR1078 "Génétique, Génomique Fonctionnelle et Biotechnologies", Axe Microbiota

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