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NIDM-Results: Standardized reporting of mass univariate neuroimaging results in SPM, FSL and AFNI
Camille Maumet
1, *
B. Nolan Nichols
2
Guillaume Flandin
3
Karl Helmer
4
Tibor Auer
5
Alexander Bowring
1
Vanessa Sochat
6
Samir Das
7
Tristan Glatard
7, 8, 9
Richard Reynolds
10
Robert Cox
10
Gang Chen
10
Mark Jenkinson
11
Matthew Webster
11
Jason Steffener
12
Krzysztof Gorgolewski
6
Jessica Turner
13
Thomas Nichols
14, 1
Satrajit Ghosh
15
Jean-Baptiste Poline
16
David Keator
17
*
Corresponding author
9
Images et Modèles
CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Santé
Camille Maumet 1
Mail :
Correspondent author IdHAL : cmaumet ORCID : https://orcid.org/0000-0002-6290-553X
B. Nolan Nichols 2
Author
Guillaume Flandin 3
Author
Karl Helmer 4
Author
Tristan Glatard 7, 8, 9
Mail : Site :
Author
Richard Reynolds 10
Author
Robert Cox 10
Author
Gang Chen 10
Author
Mark Jenkinson 11
Author
Matthew A. Webster 11
Author
Jason Steffener 12
Author
Krzysztof Gorgolewski 6
Author
Jessica Turner 13
Author
Thomas E Nichols 14, 1
Author
Satrajit Ghosh 15
Author
Jean-Baptiste Poline 16
Author
David Keator 17
Author
1
WMG - Warwick Manufacturing Group [Coventry] (University of Warwick Coventry CV4 7AL - United Kingdom)
- University of Warwick [Coventry] (Coventry CV4 7AL - United Kingdom)
2
SRI - SRI International [Menlo Park] (333 Ravenswood Avenue Menlo Park CA, 94025 - United States)
3
Wellcome Trust Centre for Neuroimaging (12 Queen Square - London - WC1N 3BG - United Kingdom)
- UCL - University College of London [London] (Gower Street, London WC1E 6BT - United Kingdom)
4
Massachusetts General Hospital [Boston] (55 Fruit Street
Boston, MA 02114 - United States)
5
MRC CBU - Cognition and Brain Sciences Unit (15 Chaucer Road, Cambridge, CB2 7EF, England - United Kingdom)
- CAM - University of Cambridge [UK] (The Old Schools, Trinity Lane, Cambridge CB2 1TN - United Kingdom)
6
Stanford University [Stanford] (450 Serra Mall, Stanford, CA 94305-2004 - United States)
7
Montreal Neurological Institute and Hospital (3801 University Street Montreal, QC H3A 2B4
- Canada)
- McGill University (845, rue Sherbrooke O. Montréal (Québec) Canada H3A 0G4 - Canada)
8
CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Santé (7 avenue Jean Capelle, Bat Blaise Pascal, 69621 Villeurbanne Cedex - France)
- UJM - Université Jean Monnet [Saint-Étienne] (10 rue Tréfilerie - 42100 Saint-Étienne - France)
- HCL - Hospices Civils de Lyon (3 Quai des Célestins 69002 Lyon - France)
- INSA Lyon - Institut National des Sciences Appliquées de Lyon (20 Avenue Albert Einstein,
69621 Villeurbanne cedex - France)
- Université de Lyon (92 rue Pasteur - CS 30122, 69361 Lyon Cedex 07 - France)
- INSA - Institut National des Sciences Appliquées (France)
- UCBL - Université Claude Bernard Lyon 1 (43, boulevard du 11 novembre 1918, 69622 Villeurbanne cedex - France)
- Université de Lyon (92 rue Pasteur - CS 30122, 69361 Lyon Cedex 07 - France)
- CNRS - Centre National de la Recherche Scientifique : UMR5220 (France)
- INSERM - Institut National de la Santé et de la Recherche Médicale : U1206 (101, rue de Tolbiac, 75013 Paris - France)
9
Images et Modèles (France)
- CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Santé (7 avenue Jean Capelle, Bat Blaise Pascal, 69621 Villeurbanne Cedex - France)
- UJM - Université Jean Monnet [Saint-Étienne] (10 rue Tréfilerie - 42100 Saint-Étienne - France)
- HCL - Hospices Civils de Lyon (3 Quai des Célestins 69002 Lyon - France)
- INSA Lyon - Institut National des Sciences Appliquées de Lyon (20 Avenue Albert Einstein,
69621 Villeurbanne cedex - France)
- Université de Lyon (92 rue Pasteur - CS 30122, 69361 Lyon Cedex 07 - France)
- INSA - Institut National des Sciences Appliquées (France)
- UCBL - Université Claude Bernard Lyon 1 (43, boulevard du 11 novembre 1918, 69622 Villeurbanne cedex - France)
- Université de Lyon (92 rue Pasteur - CS 30122, 69361 Lyon Cedex 07 - France)
- CNRS - Centre National de la Recherche Scientifique : UMR5220 (France)
- INSERM - Institut National de la Santé et de la Recherche Médicale : U1206 (101, rue de Tolbiac, 75013 Paris - France)
10
NIH - National Institutes of Health [Bethesda] (9000 Rockville Pike, Bethesda, Maryland 20892 - United States)
11
University of Oxford [Oxford] (Wellington Square, Oxford OX1 2JD - United Kingdom)
12
Columbia University [New York] (Columbia University in the City of New York 2960 Broadway New York, NY 10027-6902 - United States)
13
Georgia State University (33 Gilmer Street SE Atlanta, GA - United States)
- USG - University System of Georgia (270 Washington Street, S.W., Atlanta, GA 30334 - United States)
14
Department of Statistics [Warwick] (Dept of Statistics University of Warwick Coventry CV4 7AL - United Kingdom)
- University of Warwick [Coventry] (Coventry CV4 7AL - United Kingdom)
15
MIT - Massachusetts Institute of Technology (77 Massachusetts Ave, Cambridge, MA 02139 - United States)
16
Henry H. Wheeler Jr. Brain Imaging Center, University of California at Berkeley (Berkeley, CA, USA - France)
17
UCI - University of California [Irvine] (Irvine, CA 92697 - United States)
- University of California (United States)
Abstract : Results of a neuroimaging study are usually shared through the publication of a scientific paper describing the experiment and analysis outcome. While hundreds of gigabytes of data are usually generated as part of an fMRI experiment, in the literature the authors typically report their results as a list of significant local maxima, i.e. locations in the brain defined in a standard space (e.g. MNI) that pass rigorous statistical testing. This practice is unsatisfactory in terms of data re-use as it does not allow for the automatic extraction of acquisition or processing information and it provides only sparse information about the location of the brain activity. While databases have been built to provide manually curated (such as BrainMap [1]) or automatically-extracted (e.g. NeuroSynth [2]) meta-data associated with published papers, ideally, these meta-data should be made available by the authors themselves at the time of the publication.
Document type :
Conference papers
Complete list of metadatas
https://www.hal.inserm.fr/inserm-01570626
Contributor : Camille Maumet <>
Submitted on : Monday, July 31, 2017 - 2:18:36 PM
Last modification on : Friday, January 24, 2020 - 4:20:04 PM
Contributor : Camille Maumet <>
Submitted on : Monday, July 31, 2017 - 2:18:36 PM
Last modification on : Friday, January 24, 2020 - 4:20:04 PM
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OHBM2016_Maumet.pdf
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- HAL Id : inserm-01570626, version 1
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CNRS | HCL | CREATIS | INSA-LYON | UNIV-LYON1 | UNIV-ST-ETIENNE | INSA-GROUPE | UDL
Citation
Camille Maumet, B. Nolan Nichols, Guillaume Flandin, Karl Helmer, Tibor Auer, et al.. NIDM-Results: Standardized reporting of mass univariate neuroimaging results in SPM, FSL and AFNI. 22nd Annual Meeting of the Organization for Human Brain Mapping (OHBM 2016), Jun 2016, Geneva, Switzerland. ⟨inserm-01570626⟩
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