W. Spalteholz, Über das Durchsichtigmachen von menschlichen und tierischen Präparaten und seine theoretischen Bedingungen, nebst Anhang, 1914.

W. Spalteholz, Uber das durchsichtigmachen von menchlichen und Tierichen Praparaten und Seine Theoretischen Bedingungen, 1911.

D. Richardson and J. Lichtman, Clarifying Tissue Clearing, Cell, vol.162, issue.2, pp.246-57, 2015.
DOI : 10.1016/j.cell.2015.06.067

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4537058

E. Susaki and H. Ueda, Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals, Cell Chemical Biology, vol.23, issue.1, pp.137-57, 2016.
DOI : 10.1016/j.chembiol.2015.11.009

J. Seo, M. Choe, and S. Kim, Clearing and Labeling Techniques for Large-Scale Biological Tissues, Molecules and Cells, vol.39, issue.6, pp.439-485, 2016.
DOI : 10.14348/molcells.2016.0088

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4916395

A. Azaripour, T. Lagerweij, C. Scharfbillig, A. Jadczak, B. Willershausen et al., A survey of clearing techniques for 3D imaging of tissues with special reference to connective tissue, Progress in Histochemistry and Cytochemistry, vol.51, issue.2, 2016.
DOI : 10.1016/j.proghi.2016.04.001

H. Dodt, U. Leischner, A. Schierloh, N. Jährling, C. Mauch et al., Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain, Nature Methods, vol.35, issue.4, pp.331-337, 2007.
DOI : 10.1126/science.286.5437.110

A. Ert?rk, C. Mauch, F. Hellal, F. Förstner, T. Keck et al., Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury, Nature Medicine, vol.2, issue.1, pp.166-71, 2012.
DOI : 10.1371/journal.pcbi.1000877

A. Ertürk, K. Becker, N. Jährling, C. Mauch, C. Hojer et al., Three-dimensional imaging of solvent-cleared organs using 3DISCO, Nature Protocols, vol.4, issue.11, pp.1983-95, 2012.
DOI : 10.1186/1472-6750-7-61

K. Becker, N. Jährling, S. Saghafi, R. Weiler, and H. Dodt, Chemical Clearing and Dehydration of GFP Expressing Mouse Brains, PLoS ONE, vol.18, issue.1, 2012.
DOI : 10.1371/journal.pone.0033916.g005

URL : http://doi.org/10.1371/journal.pone.0033916

N. Renier, E. Adams, C. Kirst, Z. Wu, R. Azevedo et al., Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes, Cell, vol.165, issue.7, pp.1789-802, 2016.
DOI : 10.1016/j.cell.2016.05.007

C. Pan, R. Cai, F. Quacquarelli, A. Ghasemigharagoz, A. Lourbopoulos et al., Shrinkage-mediated imaging of entire organs and organisms using uDISCO, Nature Methods, vol.89, issue.10, pp.859-67, 2016.
DOI : 10.1038/ncomms8990

H. Hama, H. Kurokawa, H. Kawano, R. Ando, T. Shimogori et al., Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain, Nature Neuroscience, vol.5, issue.11, pp.1481-1489, 2011.
DOI : 10.1016/j.neuron.2009.03.020

K. Chung, J. Wallace, S. Kim, S. Kalyanasundaram, A. Andalman et al., Structural and molecular interrogation of intact biological systems, Nature, vol.18, issue.7449, pp.332-339, 2013.
DOI : 10.1111/j.1471-4159.1971.tb00183.x

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4092167

K. Chung and K. Deisseroth, CLARITY for mapping the nervous system, Nature Methods, vol.339, issue.6, pp.508-521, 2013.
DOI : 10.1126/science.1236939

R. Tomer, L. Ye, B. Hsueh, and K. Deisseroth, Advanced CLARITY for rapid and high-resolution imaging of intact tissues, Nature Protocols, vol.46, issue.7, pp.1682-97, 2014.
DOI : 10.1016/S0006-3495(99)77063-3

I. Costantini, J. Ghobril, D. Giovanna, A. Mascaro, A. Silvestri et al., A versatile clearing agent for multi-modal brain imaging, Scientific Reports, vol.13, issue.1, 2015.
DOI : 10.1186/1471-2105-13-316

URL : http://www.nature.com/articles/srep09808.pdf

B. Yang, J. Treweek, R. Kulkarni, B. Deverman, C. Chen et al., Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing, Cell, vol.158, issue.4, pp.945-58, 2014.
DOI : 10.1016/j.cell.2014.07.017

URL : http://doi.org/10.1016/j.cell.2014.07.017

L. Ye, A. W. Thompson, K. Tian, Q. Hsueh, B. Ramakrishnan et al., Wiring and Molecular Features of Prefrontal Ensembles Representing Distinct Experiences, Cell, vol.165, issue.7, pp.1776-88, 2016.
DOI : 10.1016/j.cell.2016.05.010

E. Martersteck, K. Hirokawa, M. Evarts, A. Bernard, X. Duan et al., Diverse Central Projection Patterns of Retinal Ganglion Cells, Cell Reports, vol.18, issue.8, pp.2058-72, 2017.
DOI : 10.1016/j.celrep.2017.01.075

URL : http://doi.org/10.1016/j.celrep.2017.01.075

J. Li, D. Czajkowsky, X. Li, and Z. Shao, Fast immuno-labeling by electrophoretically driven infiltration for intact tissue imaging, Scientific Reports, vol.28, issue.1, 2015.
DOI : 10.1016/S0896-6273(00)00084-2

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603706

C. Lehermayr, H. Mahler, K. Mäder, and S. Fischer, Assessment of Net Charge and Protein???Protein Interactions of Different Monoclonal Antibodies, Journal of Pharmaceutical Sciences, vol.100, issue.7, pp.2551-62, 2011.
DOI : 10.1002/jps.22506

I. Espinosa-medina, E. Outin, C. Picard, Z. Chettouh, S. Dymecki et al., Parasympathetic ganglia derive from Schwann cell precursors. Science (80-), pp.87-90, 2014.
DOI : 10.1126/science.1253286

M. Belle, D. Godefroy, C. Dominici, C. Heitz-marchaland, P. Zelina et al., A Simple Method for 3D Analysis of Immunolabeled Axonal Tracts in a Transparent Nervous System, Cell Reports, vol.9, issue.4, pp.1191-201, 2014.
DOI : 10.1016/j.celrep.2014.10.037

URL : https://hal.archives-ouvertes.fr/hal-01083957

M. Belle, D. Godefroy, G. Couly, S. Malone, F. Collier et al., Tridimensional Visualization and Analysis of Early Human Development, Cell, vol.169, issue.1, pp.161-173, 2017.
DOI : 10.1016/j.cell.2017.03.008

URL : https://hal.archives-ouvertes.fr/hal-01497677

S. Reichman, A. Slembrouck, G. Gagliardi, A. Chaffiol, A. Terray et al., Generation of Storable Retinal Organoids and Retinal Pigmented Epithelium from Adherent Human iPS Cells in Xeno-Free and Feeder-Free Conditions, STEM CELLS, vol.10, issue.5, pp.1176-88, 2017.
DOI : 10.2217/rme.15.1

URL : https://hal.archives-ouvertes.fr/hal-01480587

F. Casoni, S. Malone, M. Belle, F. Luzzati, F. Collier et al., Development of the neurons controlling fertility in humans: new insights from 3D imaging and transparent fetal brains, Development, vol.143, issue.21, pp.3969-81, 2016.
DOI : 10.1242/dev.139444

Q. Welniarz, M. Morel, O. Pourchet, C. Gallea, J. Lamy et al., Non cell-autonomous role of DCC in the guidance of the corticospinal tract at the midline, Scientific Reports, vol.21, issue.1, pp.410-420, 2017.
DOI : 10.1093/cercor/bhq159

URL : https://hal.archives-ouvertes.fr/hal-01502372

S. Kim, J. Cho, E. Murray, N. Bakh, H. Choi et al., Stochastic electrotransport selectively enhances the transport of highly electromobile molecules, Proceedings of the National Academy of Sciences, vol.48, issue.4, pp.6274-83, 2015.
DOI : 10.1126/science.1260088

E. Lee, J. Choi, J. Y. Kim, J. Jang, Y. Lee et al., ACT-PRESTO: Rapid and consistent tissue clearing and labeling method for 3-dimensional (3D) imaging, Scientific Reports, vol.221, issue.1, pp.18631-18641, 2016.
DOI : 10.1016/j.neuroscience.2012.06.059

URL : http://doi.org/10.1038/srep18631

A. Klingberg, A. Hasenberg, I. Ludwig-portugall, A. Medyukhina, L. Männ et al., Fully Automated Evaluation of Total Glomerular Number and Capillary Tuft Size in Nephritic Kidneys Using Lightsheet Microscopy, Journal of the American Society of Nephrology, vol.28, issue.2, pp.452-461, 2017.
DOI : 10.1681/ASN.2016020232

E. Susaki, K. Tainaka, D. Perrin, F. Kishino, T. Tawara et al., Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis, Cell, vol.157, issue.3, pp.726-765, 2014.
DOI : 10.1016/j.cell.2014.03.042

URL : http://doi.org/10.1016/j.cell.2014.03.042

M. Ke, S. Fujimoto, and T. Imai, SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction, Nature Neuroscience, vol.1, issue.8, pp.1154-61, 2013.
DOI : 10.1038/nprot.2006.276

E. Poguzhelskaya, D. Artamonov, A. Bolshakova, O. Vlasova, and I. Bezprozvanny, Simplified method to perform CLARITY imaging, Molecular Neurodegeneration, vol.9, issue.1, pp.191750-1326, 2014.
DOI : 10.1016/S0896-6273(00)00084-2

URL : http://doi.org/10.1186/1750-1326-9-19

T. Lerner, C. Shilyansky, T. Davidson, K. Evans, K. Beier et al., Intact-Brain Analyses Reveal Distinct Information Carried by SNc Dopamine Subcircuits, Cell, vol.162, issue.3, pp.635-682, 2015.
DOI : 10.1016/j.cell.2015.07.014

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4790813

N. Renier, Z. Wu, D. Simon, J. Yang, P. Ariel et al., iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging, Cell, vol.159, issue.4, 2014.
DOI : 10.1016/j.cell.2014.10.010

E. Sylwestrak, P. Rajasethupathy, M. Wright, A. Jaffe, and K. Deisseroth, Multiplexed Intact-Tissue Transcriptional Analysis at Cellular Resolution, Cell, vol.164, issue.4, pp.792-804, 2016.
DOI : 10.1016/j.cell.2016.01.038

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4775740

F. Casoni, S. Malone, M. Belle, F. Luzzati, F. Collier et al., Development of the neurons controlling fertility in humans: new insights from 3D imaging and transparent fetal brains, Development, vol.143, issue.21, pp.3969-81, 2016.
DOI : 10.1242/dev.139444

R. Torres, S. Vesuna, and M. Levene, High-Resolution, 2- and 3-Dimensional Imaging of Uncut, Unembedded Tissue Biopsy Samples, Archives of Pathology & Laboratory Medicine, vol.138, issue.3, pp.395-402, 2014.
DOI : 10.5858/arpa.2013-0094-OA

M. Van-royen, E. Verhoef, C. Kweldam, W. Van-cappellen, G. Kremers et al., Three-dimensional microscopic analysis of clinical prostate specimens, Histopathology, vol.138, issue.6, pp.985-92, 2016.
DOI : 10.5858/arpa.2013-0094-OA

F. Davis, B. Lloyd-lewis, O. Harris, S. Kozar, D. Winton et al., Single-cell lineage tracing in the mammary gland reveals stochastic clonal dispersion of stem/progenitor cell progeny, Nature Communications, vol.57, p.13053, 2016.
DOI : 10.1186/1741-7007-8-89

B. Lloyd-lewis, F. Davis, O. Harris, J. Hitchcock, F. Lourenco et al., Imaging the mammary gland and mammary tumours in 3D: optical tissue clearing and immunofluorescence methods, Breast Cancer Research, vol.23, issue.1, pp.127-137, 2016.
DOI : 10.1016/j.chembiol.2015.11.009

F. Amat, B. Höckendorf, Y. Wan, W. Lemon, K. Mcdole et al., Efficient processing and analysis of large-scale light-sheet microscopy data, Nature Protocols, vol.546, issue.11, pp.1679-96, 2015.
DOI : 10.1038/nmeth.2089