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Journal articles
The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments
Krzysztof Gorgolewski
1, *
Tibor Auer
2
Vince Calhoun
3, 4
Cameron Craddock
5
Samir Das
6
Eugene Duff
7
Guillaume Flandin
8
Satrajit Ghosh
9
Tristan Glatard
10
Yaroslav Halchenko
11
Daniel Handwerker
12
Michael Hanke
13
David Keator
14
Xiangrui Li
15
Zachary Michael
16
Camille Maumet
17
Nolan Nichols
18, 1
Thomas Nichols
19, 17
John Pellman
20
Jean-Baptiste Poline
21, 22
Ariel Rokem
23
Gunnar Schaefer
24
Vanessa Sochat
1
William Triplett
1
Jessica Turner
24
Gaël Varoquaux
25, 26
Russell Poldrack
27
*
Corresponding author
10
Images et Modèles
CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Santé
26
PARIETAL - Modelling brain structure, function and variability based on high-field MRI data
Inria Saclay - Ile de France, NEUROSPIN - Service NEUROSPIN
Krzysztof J. Gorgolewski 1
Correspondent author
Tibor Auer 2
Author
Vince D. Calhoun 3, 4
Author
Cameron R. Craddock 5
Author
Tristan Glatard 10
Author
Yaroslav O. Halchenko 11
Author
Daniel A. Handwerker 12
Author
Michael Hanke 13
Author
David Keator 14
Author
Xiangrui Li 15
Author
Zachary Michael 16
Author
Camille Maumet 17
Author IdHAL : cmaumet IdRef : https://www.idref.fr/171543009 ORCID : https://orcid.org/0000-0002-6290-553X
Nolan B. Nichols 18, 1
Author
Thomas E. Nichols 19, 17
Author
John Pellman 20
Author
Jean-Baptiste Poline 21, 22
Author
Jessica A. Turner 24
Author
Gaël Varoquaux 25, 26
Author IdHAL : gael-varoquaux ORCID : https://orcid.org/0000-0003-1076-5122
Russell A. Poldrack 27
Author
1
Stanford University (450 Serra Mall, Stanford, CA 94305-2004 - United States)
2
CAM - University of Cambridge [UK] (The Old Schools, Trinity Lane, Cambridge CB2 1TN - United Kingdom)
3
ECE Department - Department of Electrical and Computer Engineering [Albuquerque] (MSC01 1100 1 University of New Mexico ECE Bldg., Room 125 Albuquerque, NM 87131-0001 - United States)
- The University of New Mexico [Albuquerque] (Albuquerque, Nouveau-Mexique 87131 - United States)
4
The Mind Research Network (1101 Yale Blvd NE, Albuquerque, NM 87106, États-Unis - United States)
5
NKI - Nathan S. Kline Institute for Psychiatric Research (Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962 - United States)
6
McGill University = Université McGill [Montréal, Canada] (845, rue Sherbrooke O. Montréal (Québec) Canada H3A 0G4 - Canada)
7
FMRIB - Oxford Centre for Functional Magnetic Resonance Imaging of the Brain (FMRIB Centre University of Oxford Nuffield Department of Clinical Neurosciences John Radcliffe Hospital Headington Oxford OX3 9DU - United Kingdom)
- University of Oxford [Oxford] (Wellington Square, Oxford OX1 2JD - United Kingdom)
8
Wellcome Trust Centre for Neuroimaging (12 Queen Square - London - WC1N 3BG - United Kingdom)
- UCL - University College of London [London] (Gower Street, London WC1E 6BT - United Kingdom)
9
IRFU - Institut de Recherches sur les lois Fondamentales de l'Univers (CEA Saclay
F-91191 Gif sur Yvette cedex - France)
- CEA - Commissariat à l'énergie atomique et aux énergies alternatives : DRF/IRFU (Centre de Saclay Centre de Grenoble Centre de Cadarache etc - France)
- Université Paris-Saclay (Espace Technologique, Bat. Discovery - RD 128 - 2e ét., 91190 Saint-Aubin - France)
10
Images et Modèles (France)
- CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Santé (7 avenue Jean Capelle, Bat Blaise Pascal, 69621 Villeurbanne Cedex - France)
- UCBL - Université Claude Bernard Lyon 1 (43, boulevard du 11 novembre 1918, 69622 Villeurbanne cedex - France)
- Université de Lyon (92 rue Pasteur - CS 30122, 69361 Lyon Cedex 07 - France)
- INSA Lyon - Institut National des Sciences Appliquées de Lyon (20 Avenue Albert Einstein,
69621 Villeurbanne cedex - France)
- INSA - Institut National des Sciences Appliquées (France)
- Université de Lyon (92 rue Pasteur - CS 30122, 69361 Lyon Cedex 07 - France)
- HCL - Hospices Civils de Lyon (3 Quai des Célestins 69002 Lyon - France)
- UJM - Université Jean Monnet [Saint-Étienne] (10 rue Tréfilerie - 42100 Saint-Étienne - France)
- INSERM - Institut National de la Santé et de la Recherche Médicale : U1206 (101, rue de Tolbiac, 75013 Paris - France)
- CNRS - Centre National de la Recherche Scientifique : UMR5220 (France)
- UCBL - Université Claude Bernard Lyon 1 (43, boulevard du 11 novembre 1918, 69622 Villeurbanne cedex - France)
11
Department of Psychological and Brain Sciences (Dartmouth College 6207 Moore Hall Hanover, NH 03755 - France)
- Dartmouth College [Hanover] (Hanover, NH 03755 USA - United States)
12
NIMH - National Institute of Mental Health (National Institute of Mental Health
Office of Science Policy, Planning, and Communications
6001 Executive Boulevard, Room 6200, MSC 9663
Bethesda, MD 20892-9663 - United States)
13
OVGU - Otto-von-Guericke University [Magdeburg] (Universitätsplatz 2 D-39106 Magdeburg - Germany)
14
UCI - University of California [Irvine] (Irvine, CA 92697 - United States)
- University of California (United States)
15
Shandong University (27 Shanda Nanlu, Jinan , Shandong , P.R.China 250100 - China)
16
Squishymedia [Portland] (Portland, Oregon 97232 - United States)
17
WMG - Warwick Manufacturing Group [Coventry] (University of Warwick Coventry CV4 7AL - United Kingdom)
- University of Warwick [Coventry] (Coventry CV4 7AL - United Kingdom)
18
SRI - Silsoe Research Institute (Wrest Park, MK45 4HS Silsoe - United Kingdom)
19
Department of Statistics [Warwick] (Dept of Statistics University of Warwick Coventry CV4 7AL - United Kingdom)
- University of Warwick [Coventry] (Coventry CV4 7AL - United Kingdom)
20
Child Mind Institute (101 East 56th Street, New York, NY 10022 - United States)
21
HWNI - The Helen Wills Neuroscience Institute (3210F Tolman Hall MC 3192 Berkeley, CA 94720-3192 - United States)
- University of California [Berkeley] (Berkeley, CA - United States)
- University of California (United States)
22
LBNL - Lawrence Berkeley National Laboratory [Berkeley] (1 Cyclotron Rd. MS 50A-1148, Berkeley, CA 94720 - United States)
23
University of Washington [Seattle] (Seattle, Washington 98105 - United States)
24
Georgia State University (33 Gilmer Street SE Atlanta, GA - United States)
- USG - University System of Georgia (270 Washington Street, S.W., Atlanta, GA 30334 - United States)
25
NEUROSPIN - Service NEUROSPIN (France)
- DRF (CEA) - Direction de Recherche Fondamentale (CEA) : DRF/JOLIOT (Direction de Recherche Fondamentale
Fundamental Research Division
CEA Saclay
91191 Gif-sur-Yvette
- France)
- CEA - Commissariat à l'énergie atomique et aux énergies alternatives (Centre de Saclay Centre de Grenoble Centre de Cadarache etc - France)
- Université Paris-Saclay (Espace Technologique, Bat. Discovery - RD 128 - 2e ét., 91190 Saint-Aubin - France)
26
PARIETAL - Modelling brain structure, function and variability based on high-field MRI data (Neurospin, CEA Saclay, Bâtiment 145, 91191 Gif-sur-Yvette Cedex - France)
- Inria Saclay - Ile de France (1 rue Honoré d'Estienne d'Orves
Bâtiment Alan Turing
Campus de l'École Polytechnique
91120 Palaiseau - France)
- Inria - Institut National de Recherche en Informatique et en Automatique (Domaine de Voluceau Rocquencourt - BP 105 78153 Le Chesnay Cedex - France)
- NEUROSPIN - Service NEUROSPIN (France)
- DRF (CEA) - Direction de Recherche Fondamentale (CEA) : DRF/JOLIOT (Direction de Recherche Fondamentale
Fundamental Research Division
CEA Saclay
91191 Gif-sur-Yvette
- France)
- CEA - Commissariat à l'énergie atomique et aux énergies alternatives (Centre de Saclay Centre de Grenoble Centre de Cadarache etc - France)
- Université Paris-Saclay (Espace Technologique, Bat. Discovery - RD 128 - 2e ét., 91190 Saint-Aubin - France)
- DRF (CEA) - Direction de Recherche Fondamentale (CEA) : DRF/JOLIOT (Direction de Recherche Fondamentale
Fundamental Research Division
CEA Saclay
91191 Gif-sur-Yvette
- France)
27
CALTECH - California Institute of Technology (1200 East California Blvd, Pasadena, California 91125 - United States)
Abstract : The development of magnetic resonance imaging (MRI) techniques has defined modern neuroimaging. Since its inception, tens of thousands of studies using techniques such as functional MRI and diffusion weighted imaging have allowed for the non-invasive study of the brain. Despite the fact that MRI is routinely used to obtain data for neuroscience research, there has been no widely adopted standard for organizing and describing the data collected in an imaging experiment. This renders sharing and reusing data (within or between labs) difficult if not impossible and unnecessarily complicates the application of automatic pipelines and quality assurance protocols. To solve this problem, we have developed the Brain Imaging Data Structure (BIDS), a standard for organizing and describing MRI datasets. The BIDS standard uses file formats compatible with existing software, unifies the majority of practices already common in the field, and captures the metadata necessary for most common data processing operations.
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Journal articles
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https://www.hal.inserm.fr/inserm-01345616
Contributor : Camille Maumet <>
Submitted on : Thursday, July 14, 2016 - 3:57:12 PM
Last modification on : Thursday, July 8, 2021 - 3:50:03 AM
Contributor : Camille Maumet <>
Submitted on : Thursday, July 14, 2016 - 3:57:12 PM
Last modification on : Thursday, July 8, 2021 - 3:50:03 AM
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Identifiers
- HAL Id : inserm-01345616, version 1
- DOI : 10.1038/sdata.2016.44
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INSERM | CNRS | HCL | DSM-IRFU | CREATIS | INRIA | CEA | CEA-UPSAY | INSA-LYON | UNIV-LYON1 | JOLIOT | CEA-DRF | UNIV-ST-ETIENNE | NEUROSPIN | INSA-GROUPE | UDL | GS-COMPUTER-SCIENCE | GS-ENGINEERING
Citation
Krzysztof Gorgolewski, Tibor Auer, Vince Calhoun, Cameron Craddock, Samir Das, et al.. The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific Data , Nature Publishing Group, 2016, 3, pp.160044. ⟨10.1038/sdata.2016.44⟩. ⟨inserm-01345616⟩
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