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Article Dans Une Revue American Journal of Human Genetics Année : 2014

Convergence of Genes and Cellular Pathways Dysregulated in Autism Spectrum Disorders.

Dalila Pinto (1, 2, 3, 4, 5, 6) , Elsa Delaby (7) , Daniele Merico (8) , Mafalda Barbosa (1, 2, 3) , Alison Merikangas (9) , Lambertus Klei (10) , Bhooma Thiruvahindrapuram (8) , Xiao Xu (1, 2, 3) , Robert Ziman (8) , Zhuozhi Wang (8) , Jacob A. S. Vorstman (11) , Ann Thompson (12) , Regina Regan (13) , Marion Pilorge (7) , Giovanna Pellecchia (8) , Alistair T. Pagnamenta (14) , Bárbara Oliveira (15) , Christian R. Marshall (8, 16) , Tiago R. Magalhaes (13, 15, 17) , Jennifer K. Lowe (18, 19) , Jennifer L. Howe (8) , Anthony J. Griswold (20) , John Gilbert (20) , Eftichia Duketis (21) , Beth A. Dombroski (22, 23) , Maretha V. de Jonge (11) , Michael Cuccaro (20) , Emily L. Crawford (24, 25) , Catarina T. Correia (15) , Judith Conroy (13) , Inês C. Conceição (15) , Andreas G. Chiocchetti (21, 26) , Jillian P. Casey (13) , Guiqing Cai (1, 2, 3) , Christelle Cabrol (7) , Nadia Bolshakova (9) , Elena Bacchelli (27) , Richard Anney (9) , Steven Gallinger (28) , Michelle Cotterchio (29) , Graham Casey (30) , Lonnie Zwaigenbaum (31) , Kerstin Wittemeyer (32) , Kirsty Wing (14) , Simon Wallace (33) , Herman van Engeland (11) , Ana Tryfon (2, 3) , Susanne Thomson (25, 24) , Latha Soorya (2, 3) , Bernadette Rogé (34) , Wendy Roberts (35) , Fritz Poustka (21) , Susana Mouga (36, 37) , Nancy Minshew (10) , Alison L. Mcinnes (2, 3) , Susan G. Mcgrew (38) , Catherine Lord (39) , Marion Leboyer (40, 41) , Ann S. Le Couteur (42, 43) , Alexander Kolevzon (2, 3, 4, 44) , Patricia Jiménez González (45) , Suma Jacob (46) , Richard Holt (14) , Stephen Guter (46) , Jonathan Green (47) , Andrew Green (13) , Christopher Gillberg (48, 49) , Bridget A. Fernandez (50, 51) , Frederico Duque (36) , Richard Delorme (52) , Geraldine Dawson (53) , Pauline Chaste (10) , Cátia Café (36) , Sean Brennan (9) , Thomas Bourgeron (52) , Patrick F. Bolton (54, 55) , Sven Bölte (21) , Raphael Bernier (56) , Gillian Baird (57) , Anthony J. Bailey (58, 59) , Evdokia Anagnostou (60) , Joana Almeida (36) , Ellen M. Wijsman (61, 62) , Veronica J. Vieland (63) , Astrid M. Vicente (15, 17) , Gerard D. Schellenberg (22, 64) , Margaret Pericak-Vance (20) , Andrew D. Paterson (8) , Jeremy R. Parr (65, 66) , Guiomar Oliveira (36, 37) , John I. Nurnberger (67) , Anthony P. Monaco (14) , Elena Maestrini (27) , Sabine M. Klauck (68) , Hakon Hakonarson (69, 70) , Jonathan L. Haines (24, 25) , Daniel H. Geschwind (18) , Christine M. Freitag (21) , Susan E. Folstein (20, 71, 72) , Sean Ennis (13) , Hilary Coon (73) , Agatino Battaglia (74) , Peter Szatmari (12) , James S. Sutcliffe (24, 25) , Joachim Hallmayer (75) , Michael Gill (9) , Edwin H. Cook (46, 76) , Joseph D. Buxbaum (1, 2, 3, 4, 5, 77) , Bernie Devlin (10) , Louise Gallagher (9) , Catalina Betancur (7) , Stephen W. Scherer (8, 16)
1 Departments of Psychiatry, Genetics and Genomic Sciences
2 Department of Psychiatry
3 Seaver Autism Center for Research and Treatment
4 Friedman Brain Institute
5 The Mindich Child Health and Development Institute
6 The Icahn Genomics Institute [New York, USA]
7 NPS - Neuroscience Paris Seine
8 Program in Genetics and Genomic Biology
9 Department of Psychiatry
10 Department of Psychiatry [Pittsburgh]
11 Department of Psychiatry
12 Department of Psychiatry and Behavioural Neurosciences
13 ACoRD - Academic Centre on Rare Diseases
14 The Wellcome Trust Centre for Human Genetics [Oxford]
15 INSA - Instituto Nacional de Saùde Dr Ricardo Jorge [Portugal]
16 McLaughlin Centre
17 BioFIG
18 Department of Neurology
19 Fisico-Quimica Biologica
20 John P. Hussman Institute for Human Genomics
21 Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy
22 Pathology and Laboratory Medicine
23 Department of Pathology
24 Vanderbilt Brain Institute
25 Department of Molecular Physiology & Biophysics and Psychiatry
26 Division of Molecular Genome Analysis
27 Department of Pharmacy and Biotechnology
28 Familial Gastrointestinal Cancer Registry
29 Prevention & Cancer Control
30 Department of Preventive Medicine
31 Department of Pediatrics
32 School of Education
33 Department of Psychiatry
34 Octogone - Octogone Unité de Recherche Interdisciplinaire
35 Autism Research Unit
36 UNDA - Unidade de Neurodesenvolvimento e Autismo
37 Institute for Biomedical Imaging and Life Science
38 Department of Pediatrics
39 CADB - Center for Autism and the Developing Brain
40 IMRB - Institut Mondor de Recherche Biomédicale
41 Service de psychiatrie
42 Institute of Health and Society
43 Department of Child and Adolescent Psychiatry
44 Department of Pediatrics
45 Child Developmental and Behavioral Unit
46 Department of Psychiatry
47 Manchester Academic Health Sciences Centre
48 Gillberg Neuropsychiatry Centre [Göteborg, Sueden]
49 Institute of Child Health
50 MUN - Memorial University of Newfoundland = Université Memorial de Terre-Neuve [St. John's, Canada]
51 Disciplines of Genetics and Medicine
52 Génétique Humaine et Fonctions Cognitives
53 Department of Psychiatry and Behavioral Sciences
54 Institute of Psychiatry
55 Department of Child and Adolescent Psychiatry
56 Department of Psychiatry and Behavioral Sciences
57 Paediatric Neurodisability
58 SGDP - MRC Social, Genetic and Developmental Psychiatry Centre
59 Department of Psychiatry
60 Bloorview Research Institute
61 Division of Medical Genetics [Seattle]
62 Departments of Biostatistics and Medicine
63 Battelle Center for Mathematical Medicine
64 Pathology and Laboratory Medicine
65 ION - Institute of Neuroscience [Newcastle]
66 Institutes of Neuroscience and Health and Society
67 Department of Psychiatry
68 Division of Molecular Genome Analysis
69 The Center for Applied Genomics
70 Department of Pediatrics
71 Utah Autism Research Program
72 Department of Psychiatry
73 Department of Developmental Neuroscience
74 Department of Psychiatry and Behavioral Sciences [Stanford]
75 Stanford School of Medicine [Stanford]
76 Institute for Juvenile Research
77 Department of Neuroscience

Résumé

Rare copy-number variation (CNV) is an important source of risk for autism spectrum disorders (ASDs). We analyzed 2,446 ASD-affected families and confirmed an excess of genic deletions and duplications in affected versus control groups (1.41-fold, p = 1.0 × 10(-5)) and an increase in affected subjects carrying exonic pathogenic CNVs overlapping known loci associated with dominant or X-linked ASD and intellectual disability (odds ratio = 12.62, p = 2.7 × 10(-15), ∼3% of ASD subjects). Pathogenic CNVs, often showing variable expressivity, included rare de novo and inherited events at 36 loci, implicating ASD-associated genes (CHD2, HDAC4, and GDI1) previously linked to other neurodevelopmental disorders, as well as other genes such as SETD5, MIR137, and HDAC9. Consistent with hypothesized gender-specific modulators, females with ASD were more likely to have highly penetrant CNVs (p = 0.017) and were also overrepresented among subjects with fragile X syndrome protein targets (p = 0.02). Genes affected by de novo CNVs and/or loss-of-function single-nucleotide variants converged on networks related to neuronal signaling and development, synapse function, and chromatin regulation.

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Dates et versions

inserm-00986225 , version 1 (01-05-2014)

Identifiants

Citer

Dalila Pinto, Elsa Delaby, Daniele Merico, Mafalda Barbosa, Alison Merikangas, et al.. Convergence of Genes and Cellular Pathways Dysregulated in Autism Spectrum Disorders.. American Journal of Human Genetics, 2014, 94 (5), pp.677-694. ⟨10.1016/j.ajhg.2014.03.018⟩. ⟨inserm-00986225⟩
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