The subviral RNA database: a toolbox for viroids, the hepatitis delta virus and satellite RNAs research, BMC Microbiology, vol.6, issue.1, p.24, 2006. ,
DOI : 10.1186/1471-2180-6-24
The crystal structure of an AII-RNAhammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage, Cell, vol.81, issue.7, pp.991-1002, 1995. ,
DOI : 10.1016/S0092-8674(05)80004-2
Capturing the Structure of a Catalytic RNA Intermediate: The Hammerhead Ribozyme, Science, vol.274, issue.5295, pp.2065-2069, 1996. ,
DOI : 10.1126/science.274.5295.2065
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity, Nature Structural Biology, vol.10, issue.9, pp.708-712, 2003. ,
DOI : 10.1038/nsb959
High-pressure analysis of a hammerhead ribozyme from Chrysanthemum chlorotic mottle viroid reveals two different populations of self-cleaving molecule, FEBS Journal, vol.20, issue.19, pp.3739-3747, 2011. ,
DOI : 10.1111/j.1742-4658.2011.08291.x
A 1.9 ?? Crystal Structure of the HDV Ribozyme Precleavage Suggests both Lewis Acid and General Acid Mechanisms Contribute to Phosphodiester Cleavage, Biochemistry, vol.49, issue.31, pp.6508-6518, 2010. ,
DOI : 10.1021/bi100670p
URL : https://hal.archives-ouvertes.fr/in2p3-00420482
Replication of avocado sunblotch viroid: evidence for a symmetric pathway with two rolling circles and hammerhead ribozyme processing., Proceedings of the National Academy of Sciences, vol.91, issue.26, pp.12813-12817, 1994. ,
DOI : 10.1073/pnas.91.26.12813
Viroids: unusual small pathogenic RNAs, Acta Biochim Pol, vol.51, pp.587-607, 2004. ,
Comparison of multimeric plus and minus forms of viroids and virusoids, Plant Molecular Biology, vol.137, issue.5, pp.293-304, 1985. ,
DOI : 10.1007/BF02418248
Loops in Viroids. Accessibility to tRNA Anticodon Binding, European Journal of Biochemistry, vol.18, issue.2, pp.227-235, 1980. ,
DOI : 10.1111/j.1432-1033.1980.tb04307.x
Viroid: A Useful Model for Studying the Basic Principles of Infection and RNA Biology, Molecular Plant-Microbe Interactions, vol.20, issue.1, pp.7-20, 2007. ,
DOI : 10.1094/MPMI-20-0007
Probing Adenine Rings and Backbone Linkages Using Base Specific Isotope-Edited Raman Spectroscopy: Application to Group II Intron Ribozyme Domain V, Biochemistry, vol.49, issue.16, pp.3427-3435, 2010. ,
DOI : 10.1021/bi902117w
Evolution from possible primitive tRNAviroids to early poly-tRNA-derived mRNAs: a new approach from the poly-tRNA theory, Genome Inform, vol.16, pp.94-103, 2005. ,
Ions in the HDV Ribozyme, Biochemistry, vol.48, issue.50, pp.11961-11970, 2009. ,
DOI : 10.1021/bi901091v
Characteristics and variations of B-type DNA conformations in solutions: a quantitative analysis of Raman band intensities of eight DNAs, Biochemistry, vol.25, issue.9, pp.2664-2671, 1986. ,
DOI : 10.1021/bi00357a056
Polarized laser Raman studies of biological polymers. JC h e mP h y s1969, pp.3993-4005 ,
Determination of the Backbone Structure of Nucleic Acids and Nucleic Acid Oligomers by Laser Raman Scattering, Proceedings of the National Academy of Sciences, vol.69, issue.4, pp.938-941, 1972. ,
DOI : 10.1073/pnas.69.4.938
Conformational dependence of the Raman scattering intensities from polynucleotides. III. Order-disorder changes in helical structures, Biopolymers, vol.1, issue.8, pp.1377-1416, 1971. ,
DOI : 10.1002/bip.360100811
Conformational dependence of the Raman scattering intensities from polynucleotides, Biopolymers, vol.91, issue.1, pp.69-88, 1971. ,
DOI : 10.1002/bip.360100107
Raman studies of nucleic acids VI. Conformational structures of tRNAfMet, tRNAVal and tRNAPhe2, Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, vol.277, issue.1, pp.71-79, 1972. ,
DOI : 10.1016/0005-2787(72)90353-X
Kinetics of hydrogen-deuterium exchange in adenosine 5'-monophosphate, adenosine 3':5'-monophosphate, and poly(riboadenylic acid) determined by laser-Raman spectroscopy, Biochemistry, vol.14, issue.23, pp.5210-5218, 1975. ,
DOI : 10.1021/bi00694a030
Laser Raman Spectroscopy of Nucleic Acids, Nucleic Acids Mol Biol, vol.2, pp.1-30, 1988. ,
DOI : 10.1007/978-3-642-83384-7_1
Local conformations and polymorphism of DNA duplexes as revealed by their Raman spectra.I nAdvances in Spectroscopy ,
Spectroscopy of Biological Systems, pp.177-232 ,
Raman Tensors and their application in structural studies of biological systems, Proceedings of the Japan Academy, Series B, vol.85, issue.3, pp.83-97, 2009. ,
DOI : 10.2183/pjab.85.83
Raman Spectrum of a Transfer RNA, Science, vol.174, issue.4014, pp.1142-1144, 1971. ,
DOI : 10.1126/science.174.4014.1142
Raman and Raman optical activity (ROA) analysis of RNA structural motifs in Domain I of the EMCV IRES, Nucleic Acids Research, vol.35, issue.4, pp.1169-1177, 2007. ,
DOI : 10.1093/nar/gkm012
Raman and Raman optical activity (ROA) analysis of RNA structural motifs, Vibrational Spectroscopy, vol.48, issue.1, pp.37-43, 2008. ,
DOI : 10.1016/j.vibspec.2007.11.007
Raman spectral studies of nucleic acids and related molecules???I Ribonucleic acid derivatives, Spectrochimica Acta Part A: Molecular Spectroscopy, vol.23, issue.9, p.2551, 1967. ,
DOI : 10.1016/0584-8539(67)80149-1
The Laser Excited Raman Spectra of Poly(cytidylic acid), Macromolecules, vol.3, issue.5, p.583, 1970. ,
DOI : 10.1021/ma60017a022
Raman studies of nucleic acids. VII. Poly A ?? poly U and poly G ?? Poly C, Biopolymers, vol.69, issue.12, pp.2423-2437, 1972. ,
DOI : 10.1002/bip.1972.360111205
Melting and premelting phenomenon in DNA by laser Raman scattering, Biopolymers, vol.8, issue.2, pp.247-264, 1975. ,
DOI : 10.1002/bip.1975.360140202
Conformational geometry and vibrational frequencies of nucleic acid chains, Biopolymers, vol.93, issue.6, pp.1259-1271, 1975. ,
DOI : 10.1002/bip.1975.360140614
Design of the helix-turn-helix motif: nonlocal effects of quaternary structure in DNA recognition investigated by laser raman spectroscopy, Biochemistry, vol.30, issue.18, pp.4381-4388, 1991. ,
DOI : 10.1021/bi00232a003
Raman studies of nucleic acids IV, Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, vol.247, issue.3, pp.449-462, 1971. ,
DOI : 10.1016/0005-2787(71)90031-1
Interactions of cyclic AMP and its dibutyryl analogue with model membrane: X-ray diffraction and Raman spectroscopy study using cubic liquid-crystalline phases of monoolein, Biophys Chem, vol.90, pp.75-87, 2001. ,
Raman spectroscopic measurement of base stacking in solutions of adenosine, AMP, ATP, and oligoadenylates, Biochemistry, vol.27, issue.25, pp.8899-8903, 1988. ,
DOI : 10.1021/bi00425a005
Effects of hydrogen bonding on the UV resonance Raman bands of the adenine ring and its C8-deuterated analog, Journal of Molecular Structure, vol.447, issue.1-2, pp.61-69, 1998. ,
DOI : 10.1016/S0022-2860(98)00301-9
Raman studies of nucleic acids VIII estimation of RNA secondary structure from raman scattering by phosphate-group vibrations, Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis, vol.312, issue.2, pp.311-322, 1973. ,
DOI : 10.1016/0005-2787(73)90376-6
Studies of virus structure by laser-Raman spectroscopy. 4. Turnip yellow mosaic virus and capsids, Biochemistry, vol.17, issue.11, pp.2118-2123, 1978. ,
DOI : 10.1021/bi00604a015
Raman diagnosis of nucleic acid structure: sugar-puckering and glycosidic conformation in the guanosine moiety, Nucleic Acids Research, vol.11, issue.5, pp.1579-1588, 1983. ,
DOI : 10.1093/nar/11.5.1579
Thermodynamic and structural features of ultrastable DNA and RNA hairpins, JM o lS t r u c t2003, pp.67-74 ,
DOI : 10.1016/S0022-2860(02)00627-0
Interactions of cyclic AMP and its dibutyryl analogue with model membrane: X-ray diffraction and Raman spectroscopic study using cubic liquid???crystalline phases of monoolein, Biophysical Chemistry, vol.90, issue.1, pp.75-87, 2001. ,
DOI : 10.1016/S0301-4622(01)00133-8
Arabidopsis thaliana has the enzymatic machinery for replicating representative viroid species of the family Pospiviroidae, Proceedings of the National Academy of Sciences, vol.101, issue.17, pp.6792-6797, 2004. ,
DOI : 10.1073/pnas.0401090101
Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd, Biophysical Journal, vol.65, issue.5, pp.1916-1928, 1993. ,
DOI : 10.1016/S0006-3495(93)81263-3
A Raman study of the binding of Fe(III) to ATP and AMP, Biochemical Journal, vol.287, issue.2, pp.561-566, 1992. ,
DOI : 10.1042/bj2870561
Fast characterization of cell-derived extracellular vesicles by nanoparticles tracking analysis, cryo-electron microscopy, and Raman tweezers microspectroscopy, J Extracellular Vesicles, vol.1, 2012. ,
Raman characterization of Avocado Sunblotch viroid and its response to external perturbations and self-cleavage, BMC Biophysics, vol.7, issue.1, 2002. ,
DOI : 10.1016/S0006-3495(93)81263-3
URL : https://hal.archives-ouvertes.fr/inserm-00981316