M. Cabana, C. Rand, N. Powe, A. Wu, M. Wilson et al., Why Don't Physicians Follow Clinical Practice Guidelines? A Framework for Improvement, Pediatric Research, vol.45, issue.4, Part 2 of 2, pp.1458-1465, 1999.
DOI : 10.1203/00006450-199904020-00719

F. Riou and P. Jarno, Repr??sentation et mod??lisation des trajectoires de soins, ITBM-RBM, vol.21, issue.5, pp.313-317
DOI : 10.1016/S1297-9562(00)90062-7

. Inca, Etude sur les délais de prise en charge des cancers du sein et du poumon, Collection Etudes et Perspectives. Boulogne-Billancourt: Institut National du Cancer, 2012.

R. Fetter, Y. Shin, J. Freeman, R. Averill, and J. Thompson, Case mix definition by diagnosis-related groups, Med Care, vol.18, issue.2, pp.1-53, 1980.

L. Boinot, G. Gautreau, G. Defossez, A. Daban, H. Bourgeois et al., Trajectoires hospitalières des patientes atteintes de cancer du sein en Poitou-Charentes. Rev Epidemiol Sante Publique, pp.142-148, 2007.

T. Dart, Y. Cui, G. Chatellier, and P. D. , Analysis of hospitalised patient flows using data-mining. Stud Health Technol Inform, pp.263-268, 2003.

N. Jay, A. Napoli, and F. Kohler, Cancer patient flows discovery in DRG databases. Stud Health Technol Inform, pp.725-730, 2006.
URL : https://hal.archives-ouvertes.fr/inria-00109808

Z. Hu, J. Li, T. Zhou, H. Yu, M. Suzuki et al., Ontology-Based Clinical Pathways with Semantic Rules, Journal of Medical Systems, vol.4824, issue.2007, pp.2203-2212
DOI : 10.1007/s10916-011-9687-0

Z. Huang, X. Lu, H. Duan, and W. Fan, Summarizing clinical pathways from event logs, Journal of Biomedical Informatics, vol.46, issue.1, pp.111-127
DOI : 10.1016/j.jbi.2012.10.001

URL : http://doi.org/10.1016/j.jbi.2012.10.001

Z. Huang, W. Dong, J. L. Gan, C. Lu, X. Duan et al., Discovery of clinical pathway patterns from event logs using probabilistic topic models, Journal of Biomedical Informatics, vol.47, pp.39-57, 2014.
DOI : 10.1016/j.jbi.2013.09.003

Z. Huang, X. Lu, and H. Duan, On mining clinical pathway patterns from medical behaviors, Artificial Intelligence in Medicine, vol.56, issue.1, pp.35-50
DOI : 10.1016/j.artmed.2012.06.002

A. Rebuge and D. Ferreira, Business process analysis in healthcare environments: A methodology based on process mining, Information Systems, vol.37, issue.2, pp.99-116, 2012.
DOI : 10.1016/j.is.2011.01.003

L. Bouarfa and J. Dankelman, Workflow mining and outlier detection from clinical activity logs, Journal of Biomedical Informatics, vol.45, issue.6, pp.1185-1190
DOI : 10.1016/j.jbi.2012.08.003

H. Wang, J. Li, Y. Zhang, M. Suzuki, and K. Araki, Creating personalised clinical pathways by semantic interoperability with electronic health records, Artificial Intelligence in Medicine, vol.58, issue.2, pp.81-89
DOI : 10.1016/j.artmed.2013.02.005

C. Combi, M. Gozzi, B. Oliboni, J. Juarez, and R. Marin, Temporal similarity measures for querying clinical workflows, Artificial Intelligence in Medicine, vol.46, issue.1, pp.37-54, 2009.
DOI : 10.1016/j.artmed.2008.07.013

R. Black, L. Simonato, H. Storm, and E. Démaret, Automated Data Collection in Cancer Registration, 1998.

O. Jensen, D. Parkin, R. Maclennan, C. Muir, and R. Skeet, Cancer Registration: Principles and Methods, 1991.

H. Autorité and D. Santé, HAS) and Institut National du Cancer (INCA): ALD 30 -Guide médecin sur le cancer du sein. Saint-Denis: HAS-INCA, 2010.

. Agencetechniquedel, Information sur l'Hospitalisation: Guide méthodologique de production des résumés de séjour du PMSI en médecine, chirurgie et obstétrique. Paris: Ministère du travail, de l'emploi et de la santé, 2011.

V. Jouhet, G. Defossez, C. Crim, and P. Ingrand, Automated Selection of Relevant Information for Notification of Incident Cancer Cases within a Multisource Cancer Registry, Methods of Information in Medicine, vol.52, issue.5, pp.411-421
DOI : 10.3414/ME12-01-0101

A. Burgun, L. Beux, and P. , Aspects s??mantiques de la description des trajectoires de patients, ITBM-RBM, vol.21, issue.5, pp.318-322, 2000.
DOI : 10.1016/S1297-9562(00)90063-9

C. Combi and Y. Shahar, Temporal reasoning and temporal data maintenance in medicine: Issues and challenges, Computers in Biology and Medicine, vol.27, issue.5, pp.353-368, 1997.
DOI : 10.1016/S0010-4825(96)00010-8

J. Allen, Towards a general theory of action and time, Artificial Intelligence, vol.23, issue.2, pp.123-154, 1984.
DOI : 10.1016/0004-3702(84)90008-0

A. Gabadinho, G. Ritschard, N. Müller, and M. Studer, Analyzing and visualizing state sequences in R with TraMineR, J Stat Softw, vol.40, issue.4, pp.1-37, 2011.

G. Stephen, String Searching Algorithms, 1994.
DOI : 10.1142/2418

R. Cody, An introduction to Perl regular expressions in SAS 9 Available at: http://www2.sas.com/proceedings, pp.265-294

V. Levenshtein, Binary codes capable of correcting deletions, insertions, and reversals. Soviet Physics Doklady, pp.707-710, 1966.

. Institut-de-veille-sanitaire, Comité national des registres Procédure de qualification par le CNR Available at: http://www.invs.sante.fr/Espace- professionnels/Comite-national-des-registres

V. Jouhet, G. Defossez, A. Burgun, L. Beux, P. Levillain et al., Automated Classification of Free-text Pathology Reports for Registration of Incident Cases of Cancer, Methods of Information in Medicine, vol.51, issue.3, pp.242-251
DOI : 10.3414/ME11-01-0005

URL : https://hal.archives-ouvertes.fr/hal-00643819

S. Needlman and C. Wunsch, A general method applicable to the search for similarities in the amino acid sequence of two proteins, Journal of Molecular Biology, vol.48, issue.3, pp.443-453, 1970.
DOI : 10.1016/0022-2836(70)90057-4

A. Abbott and J. Forrest, Optimal Matching Methods for Historical Sequences, Journal of Interdisciplinary History, vol.16, issue.3, pp.471-494, 1986.
DOI : 10.2307/204500

A. Abbott and A. Tsay, Sequence Analysis and Optimal Matching Methods in Sociology, Sociological Methods & Research, vol.23, issue.1, pp.3-33, 2000.
DOI : 10.1177/0049124100029001001

I. National and . Cancer, Du diagnostic au premier traitement : délais de prise en charge des cancers enregistrés par les registres spécialisés du réseau Francim, Collection État des lieux & des connaissances, 1999.

F. Molinié, C. Leux, P. Delafosse, S. Ayrault-piault, P. Arveux et al., Waiting time disparities in breast cancer diagnosis and treatment: A population-based study in France, The Breast, vol.22, issue.5, pp.810-816
DOI : 10.1016/j.breast.2013.02.009