Common Origin of Four Diverse Families of Large Eukaryotic DNA Viruses, Journal of Virology, vol.75, issue.23, pp.7511720-11734, 2001. ,
DOI : 10.1128/JVI.75.23.11720-11734.2001
Evolutionary genomics of nucleo-cytoplasmic large DNA viruses, Virus Research, vol.117, issue.1, pp.156-184, 2006. ,
DOI : 10.1016/j.virusres.2006.01.009
Origin and evolution of eukaryotic large nucleocytoplasmic DNA viruses, Intervirology, vol.2010, issue.535, pp.284-292 ,
Virus factories, double membrane vesicles and viroplasm generated in animal cells, Current Opinion in Virology, vol.1, issue.5, pp.381-387, 2011. ,
DOI : 10.1016/j.coviro.2011.09.008
Virus factories: biogenesis and structural design, Cellular Microbiology, vol.13, issue.1, pp.24-34 ,
DOI : 10.1111/cmi.12029
Chloroviruses: not your everyday plant virus, Trends in Plant Science, vol.17, issue.1, pp.1-8 ,
DOI : 10.1016/j.tplants.2011.10.005
Unusual Life Style of Giant Chlorella Viruses, Annual Review of Genetics, vol.37, issue.1, pp.153-195, 2003. ,
DOI : 10.1146/annurev.genet.37.110801.143915
Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution, Virology Journal, vol.6, issue.1, p.223, 2009. ,
DOI : 10.1186/1743-422X-6-223
Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales, Intervirology, vol.2012, issue.555, pp.321-332 ,
Poxviridae: the viruses and their replication In Fields Virology, pp.2905-2946 ,
Mimivirus: the emerging paradox of quasi-autonomous viruses, Trends in Genetics, vol.26, issue.10, pp.431-437, 2010. ,
DOI : 10.1016/j.tig.2010.07.003
Mimivirus and the emerging concept of ???giant??? virus, Virus Research, vol.117, issue.1, pp.133-144, 2006. ,
DOI : 10.1016/j.virusres.2006.01.008
URL : https://hal.archives-ouvertes.fr/hal-00005228
Redefining viruses: lessons from Mimivirus, Nature Reviews Microbiology, vol.79, issue.4, pp.315-319, 2008. ,
DOI : 10.1038/nrmicro1858
URL : https://hal.archives-ouvertes.fr/hal-00297223
The 1.2-Megabase Genome Sequence of Mimivirus, Science, vol.306, issue.5700, pp.3061344-1350, 2004. ,
DOI : 10.1126/science.1101485
URL : https://hal.archives-ouvertes.fr/hal-00651656
Genomic and evolutionary aspects of Mimivirus, Virus Research, vol.117, issue.1, pp.145-155, 2005. ,
DOI : 10.1016/j.virusres.2005.07.011
The virophage as a unique parasite of the giant mimivirus, Nature, vol.32, issue.7209, pp.455100-104, 2008. ,
DOI : 10.1038/nature07218
URL : https://hal.archives-ouvertes.fr/hal-00354651
Viruses with More Than 1,000 Genes: Mamavirus, a New Acanthamoeba polyphaga mimivirus Strain, and Reannotation of Mimivirus Genes, Genome Biology and Evolution, vol.3, issue.0, pp.737-742, 2011. ,
DOI : 10.1093/gbe/evr048
Related Giant Viruses in Distant Locations and Different Habitats: Acanthamoeba polyphaga moumouvirus Represents a Third Lineage of the Mimiviridae That Is Close to the Megavirus Lineage, Genome Biology and Evolution, vol.4, issue.12, pp.1324-1330 ,
DOI : 10.1093/gbe/evs109
Tentative Characterization of New Environmental Giant Viruses by MALDI-TOF Mass Spectrometry, Intervirology, vol.53, issue.5, pp.344-353, 2010. ,
DOI : 10.1159/000312919
Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae, Proceedings of the National Academy of Sciences, vol.108, issue.42, pp.17486-17491, 2011. ,
DOI : 10.1073/pnas.1110889108
Giant virus with a remarkable complement of genes infects marine zooplankton, Proceedings of the National Academy of Sciences, vol.107, issue.45, pp.19508-19513, 2010. ,
DOI : 10.1073/pnas.1007615107
Another Really, Really Big Virus, Viruses, vol.3, issue.12, pp.32-46, 2011. ,
DOI : 10.3390/v3010032
The Giant Cafeteria roenbergensis Virus That Infects a Widespread Marine Phagocytic Protist Is a New Member of the Fourth Domain of Life, PLoS ONE, vol.29, issue.12, p.18935, 2011. ,
DOI : 10.1371/journal.pone.0018935.s016
Taxonomic distribution of large DNA viruses in the sea, Genome Biology, vol.9, issue.7, p.106, 2008. ,
DOI : 10.1186/gb-2008-9-7-r106
Marine mimivirus relatives are probably large algal viruses, Virology Journal, vol.5, issue.1, p.12, 2008. ,
DOI : 10.1186/1743-422X-5-12
Informational Gene Phylogenies Do Not Support a Fourth Domain of Life for Nucleocytoplasmic Large DNA Viruses, PLoS ONE, vol.51, issue.6, p.21080, 2011. ,
DOI : 10.1371/journal.pone.0021080.s010
Genomics of Megavirus and the elusive fourth domain of Life, Communicative & Integrative Biology, vol.5, issue.1, pp.102-106 ,
DOI : 10.1186/1471-2164-8-456
Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya, BMC Evolutionary Biology, vol.12, issue.1, p.156 ,
DOI : 10.1074/jbc.C111.325795
Provirophages and transpovirons as the diverse mobilome of giant viruses, Proceedings of the National Academy of Sciences, vol.109, issue.44, pp.18078-18083, 2012. ,
DOI : 10.1073/pnas.1208835109
Sputnik, a Virophage Infecting the Viral Domain of Life, Adv Virus Res, vol.82, pp.63-89, 2012. ,
DOI : 10.1016/B978-0-12-394621-8.00013-3
A Virophage at the Origin of Large DNA Transposons, Science, vol.332, issue.6026, pp.231-234 ,
DOI : 10.1126/science.1199412
Virophage control of antarctic algal host-virus dynamics, Proceedings of the National Academy of Sciences, vol.108, issue.15, pp.6163-6168, 2011. ,
DOI : 10.1073/pnas.1018221108
Characterization of different viruses infecting the marine harmful algal bloom species Phaeocystis globosa, Virology, vol.341, issue.1, pp.80-90, 2005. ,
DOI : 10.1016/j.virol.2005.07.002
Phaeocystis and its interaction with viruses, Biogeochemistry, vol.79, issue.1-3, pp.201-215, 2007. ,
DOI : 10.1007/s10533-007-9096-0
A Genomic Perspective on Protein Families, Science, vol.278, issue.5338, pp.631-637, 1997. ,
DOI : 10.1126/science.278.5338.631
Computational methods for Gene Orthology inference, Briefings in Bioinformatics, vol.12, issue.5, pp.379-391, 2011. ,
DOI : 10.1093/bib/bbr030
Mushegian A: A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches, Bioinformatics, issue.12, pp.261481-1487, 2010. ,
Proteorhodopsin genes in giant viruses, Biology Direct, vol.7, issue.1, p.34, 2012. ,
DOI : 10.1006/jmbi.2000.4315
Genome trees constructed using five different approaches suggest new major bacterial clades, BMC Evolutionary Biology, vol.1, issue.1, p.8, 2001. ,
DOI : 10.1186/1471-2148-1-8
Hidden evolutionary complexity of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes, Virology Journal, vol.9, issue.1, p.161 ,
DOI : 10.1186/1743-422X-9-161
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood, Bioinformatics, vol.2010, issue.2615, pp.1910-1912 ,
Gene Repertoire of Amoeba-Associated Giant Viruses, Intervirology, vol.53, issue.5, pp.330-343 ,
DOI : 10.1159/000312918
Microorganisms Resistant to Free-Living Amoebae, Clinical Microbiology Reviews, vol.17, issue.2, pp.413-433, 2004. ,
DOI : 10.1128/CMR.17.2.413-433.2004
Amoebae as Genitors and Reservoirs of Giant Viruses, Intervirology, vol.53, issue.5, pp.321-329 ,
DOI : 10.1159/000312917
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms, Proceedings of the National Academy of Sciences, vol.106, issue.51, pp.10621848-21853, 2009. ,
DOI : 10.1073/pnas.0911354106
Diversity of Virophages in Metagenomic Data Sets, Journal of Virology, vol.87, issue.8, pp.4225-4236, 2013. ,
DOI : 10.1128/JVI.03398-12
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.253389-3402, 1997. ,
DOI : 10.1093/nar/25.17.3389
MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1797, 2004. ,
DOI : 10.1093/nar/gkh340
CD-Search: protein domain annotations on the fly, Nucleic Acids Research, vol.32, issue.Web Server, pp.327-331, 2004. ,
DOI : 10.1093/nar/gkh454
[24] Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods, Methods Enzymol, vol.266, pp.418-427, 1996. ,
DOI : 10.1016/S0076-6879(96)66026-1
The Deep Archaeal Roots of Eukaryotes, Molecular Biology and Evolution, vol.25, issue.8, pp.251619-1630, 2008. ,
DOI : 10.1093/molbev/msn108
FastTree 2 ??? Approximately Maximum-Likelihood Trees for Large Alignments, PLoS ONE, vol.5, issue.3, p.9490, 2010. ,
DOI : 10.1371/journal.pone.0009490.s003
ProtTest 3: fast selection of best-fit models of protein evolution, Bioinformatics, vol.27, issue.8, pp.1164-1165, 2011. ,
DOI : 10.1093/bioinformatics/btr088
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics, BMC Evolutionary Biology, vol.4, issue.1, p.18, 2004. ,
DOI : 10.1186/1471-2148-4-18
An Approximately Unbiased Test of Phylogenetic Tree Selection, Systematic Biology, vol.51, issue.3, pp.492-508, 2002. ,
DOI : 10.1080/10635150290069913