Sequencing technologies ??? the next generation, Nature Reviews Genetics, vol.37, issue.1, pp.31-46, 2010. ,
DOI : 10.1038/nrg2626
Biogenesis of small RNAs in animals, Nature Reviews Molecular Cell Biology, vol.274, issue.2, pp.126-139, 2009. ,
DOI : 10.1038/nrm2632
In Drosophila melanogaster the COM Locus Directs the Somatic Silencing of Two Retrotransposons through both Piwi-Dependent and -Independent Pathways, PLoS ONE, vol.16, issue.2, p.1526, 2008. ,
DOI : 10.1371/journal.pone.0001526.g007
MIWI2 Is Essential for Spermatogenesis and Repression of Transposons in the Mouse Male Germline, Developmental Cell, vol.12, issue.4, pp.503-514, 2007. ,
DOI : 10.1016/j.devcel.2007.03.001
A novel class of small RNAs bind to MILI protein in mouse testes, Nature, vol.33, pp.203-207, 2006. ,
DOI : 10.1038/nature04916
URL : https://hal.archives-ouvertes.fr/hal-00092778
A germline-specific class of small RNAs binds mammalian Piwi proteins, Nature, vol.16, pp.199-202, 2006. ,
DOI : 10.1038/nature04917
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila, Cell, vol.128, issue.6, pp.1089-1103, 2007. ,
DOI : 10.1016/j.cell.2007.01.043
An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing, Science, vol.322, issue.5906, pp.1387-1392, 2008. ,
DOI : 10.1126/science.1165171
SOAP: short oligonucleotide alignment program, Bioinformatics, vol.24, issue.5, pp.713-714, 2008. ,
DOI : 10.1093/bioinformatics/btn025
Fast and accurate long-read alignment with Burrows-Wheeler transform, Bioinformatics, vol.26, issue.5, pp.589-595, 2010. ,
DOI : 10.1093/bioinformatics/btp698
Fast gapped-read alignment with Bowtie 2, Nature Methods, vol.9, issue.4, pp.357-359 ,
DOI : 10.1093/bioinformatics/btp352
REPuter: the manifold applications of repeat analysis on a genomic scale, Nucleic Acids Research, vol.29, issue.22, pp.4633-4642, 2001. ,
DOI : 10.1093/nar/29.22.4633
A Block Sorting Lossless Data Compression Algorithm, 1994. ,
Opportunistic data structures with applications, Proceedings 41st Annual Symposium on Foundations of Computer Science, p.390, 2000. ,
DOI : 10.1109/SFCS.2000.892127
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.23.7615
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment, BMC Bioinformatics, vol.8, issue.1, p.252, 2007. ,
DOI : 10.1186/1471-2105-8-252
Approximate pattern matching using the Burrows-Wheeler transform, Data Compression Conference, 2003. Proceedings. DCC 2003, p.458, 2003. ,
DOI : 10.1109/DCC.2003.1194077
Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo, Nature, vol.23, issue.7319, pp.1128-1132, 2010. ,
DOI : 10.1038/nature09465