Dual functions of codons in the genetic code, Critical Reviews in Biochemistry and Molecular Biology, vol.83, issue.4, pp.257-265, 2010. ,
DOI : 10.3109/10409231003786094
Evolution of Prokaryotic Genes by Shift of Stop Codons, Journal of Molecular Evolution, vol.18, issue.2, pp.138-146, 2011. ,
DOI : 10.1007/s00239-010-9408-1
Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement, Science, vol.333, issue.6040, pp.348-353, 2011. ,
DOI : 10.1126/science.1205822
A different genetic code in human mitochondria, Nature, vol.71, issue.5735, pp.189-194, 1979. ,
DOI : 10.1016/0014-5793(78)80145-8
UGA is read as tryptophan in Mycoplasma capricolum., Proceedings of the National Academy of Sciences, vol.82, issue.8, pp.2306-2309, 1985. ,
DOI : 10.1073/pnas.82.8.2306
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote, PLoS Biology, vol.300, issue.9, p.30, 2006. ,
DOI : 10.1371/journal.pbio.0040286.st017
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia, Nature, vol.20, issue.7116, pp.171-178, 2006. ,
DOI : 10.1038/nature05230
URL : https://hal.archives-ouvertes.fr/hal-00090904
Genetic Code Supports Targeted Insertion of Two Amino Acids by One Codon, Science, vol.323, issue.5911, pp.259-261, 2009. ,
DOI : 10.1126/science.1164748
The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli, EMBO J, vol.14, pp.151-158, 1995. ,
The translational stop signal: Codon with a context, or extended factor recognition element?, Biochimie, vol.78, issue.11-12, pp.945-952, 1996. ,
DOI : 10.1016/S0300-9084(97)86716-8
A direct estimation of the context effect on the efficiency of termination, Journal of Molecular Biology, vol.284, issue.3, pp.579-590, 1998. ,
DOI : 10.1006/jmbi.1998.2220
Impact of the six nucleotides downstream of the stop codon on translation termination, EMBO reports, vol.23, issue.9, pp.787-793, 2001. ,
DOI : 10.1093/embo-reports/kve176
Comparison of characteristics and function of translation termination signals between and within prokaryotic and eukaryotic organisms, Nucleic Acids Research, vol.34, issue.7, pp.1959-1973, 2006. ,
DOI : 10.1093/nar/gkl074
Role of Premature Stop Codons in Bacterial Evolution, Journal of Bacteriology, vol.190, issue.20, pp.6718-6725, 2008. ,
DOI : 10.1128/JB.00682-08
The selection-mutation-drift theory of synonymous codon usage, Genetics, vol.129, pp.897-907, 1991. ,
A population genetic model for the evolution of synonymous codon usage: patterns and predictions, Genetical Research, vol.74, issue.2 ,
DOI : 10.1017/S0016672399003912
Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites, Journal of Theoretical Biology, vol.240, issue.4, pp.616-626, 2006. ,
DOI : 10.1016/j.jtbi.2005.10.020
Synonymous Codon Usage Bias Dependent on Local Nucleotide Context in the Class Deinococci, Journal of Molecular Evolution, vol.337, issue.2, pp.301-314, 2008. ,
DOI : 10.1007/s00239-008-9152-y
Measurements of spontaneous rates of mutations in the recent past and the near future, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.157, issue.17, pp.1169-1176, 2010. ,
DOI : 10.1016/j.cub.2009.07.032
Selective differences among translation termination codons, Gene, vol.63, issue.1, pp.141-145, 1988. ,
DOI : 10.1016/0378-1119(88)90553-7
Release factors differing in specificity for terminator codons., Proceedings of the National Academy of Sciences, vol.61, issue.2, pp.768-774, 1968. ,
DOI : 10.1073/pnas.61.2.768
Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3, EMBO J, vol.14, pp.4065-4072, 1995. ,
is active with eukaryotic ribosomes, FEBS Letters, vol.100, issue.2-3, pp.213-216, 2000. ,
DOI : 10.1016/S0014-5793(00)01466-6
Regulation of chloroplast translation: interactions of RNA elements, RNA-binding proteins and the plastid ribosome, Biochemical Society Transactions, vol.32, issue.4, pp.601-605, 2004. ,
DOI : 10.1042/BST0320601
Evidence That Mutation Is Universally Biased towards AT in Bacteria, PLoS Genetics, vol.85, issue.9, p.1001115, 2010. ,
DOI : 10.1371/journal.pgen.1001115.s005
Evidence of Selection upon Genomic GC-Content in Bacteria, PLoS Genetics, vol.16, issue.103, p.1001107, 2010. ,
DOI : 10.1371/journal.pgen.1001107.s005
Synonymous but not the same: the causes and consequences of codon bias, Nature Reviews Genetics, vol.7, issue.103, pp.32-42, 2011. ,
DOI : 10.1038/nrg2899
The Genetic Code Is One in a Million, Journal of Molecular Evolution, vol.47, issue.3, pp.238-248, 1998. ,
DOI : 10.1007/PL00006381
Optimization Models and the Structure of the Genetic Code, Journal of Molecular Evolution, vol.37, issue.5, pp.452-457, 2009. ,
DOI : 10.1007/s00239-009-9287-5
Exceptional error minimization in putative primordial genetic codes, Biology Direct, vol.4, issue.1, p.44, 2009. ,
DOI : 10.1186/1745-6150-4-44
URL : http://doi.org/10.1186/1745-6150-4-44
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes, Nucleic Acids Research, vol.37, issue.Database, pp.448-454, 2009. ,
DOI : 10.1093/nar/gkn684
Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990. ,
DOI : 10.1016/S0022-2836(05)80360-2
MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1797, 2004. ,
DOI : 10.1093/nar/gkh340
Evolution of Protein Molecules, pp.21-132 ,
DOI : 10.1016/B978-1-4832-3211-9.50009-7