M. Drancourt, W. Powderly, and S. Opal, Acute Diarrhea.I nInfectious Diseases, pp.381-389, 2009.

S. Alain and F. Denis, ??pid??miologie des diarrh??es aigu??s infectieuses en France et en Europe, Archives de P??diatrie, vol.14, pp.132-144, 2007.
DOI : 10.1016/S0929-693X(07)80017-0

M. Bucher, C. Meyer, B. Grötzbach, S. Wacheck, A. Stolle et al., in Southern Germany During 2000???2006, Foodborne Pathogens and Disease, vol.5, issue.3, pp.273-280, 2000.
DOI : 10.1089/fpd.2007.0076

K. Kawatsu, Y. Kumeda, M. Taquchi, W. Yamazaki-matsune, M. Kanki et al., Development and Evaluation of Immunochromatographic Assay for Simple and Rapid Detection of Campylobacter jejuni and Campylobacter coli in Human Stool Specimens, Journal of Clinical Microbiology, vol.46, issue.4, pp.1226-1231, 2008.
DOI : 10.1128/JCM.02170-07

Y. You, C. Fu, X. Zeng, D. Fang, X. Yan et al., A novel DNA microarray for rapid diagnosis of enteropathogenic bacteria in stool specimens of patients with diarrhea, Journal of Microbiological Methods, vol.75, issue.3, pp.566-571, 2008.
DOI : 10.1016/j.mimet.2008.09.007

R. Carman, A. Stevens, M. Lyerly, M. Hiltonsmith, B. Stiles et al., Clostridium difficile binary toxin (CDT) and diarrhea, Anaerobe, vol.17, issue.4, pp.161-165, 2011.
DOI : 10.1016/j.anaerobe.2011.02.005

G. Paniaqua, E. Monroy, O. Garcia-gonzales, A. J. Negrete, E. Vaca et al., Two or more enteropathogens are associated with diarrhoea in Mexican children, Annals of Clinical Microbiology and Antimicrobials, vol.6, issue.1, p.17, 2007.
DOI : 10.1186/1476-0711-6-17

S. Dixit, G. Bhandari, D. Karmacharya, S. Shrestha, S. Manadhar et al., Molecular screening of major bacterial enteropathogens in human stool samples from diarrhoeal outbreak sites, J Nepal Health Res Counc, vol.9, pp.181-185, 2011.

L. Monteiro, D. Bonnemaison, A. Vekris, K. Petry, J. Bonnet et al., Complex polysaccharides as PCR inhibitors in feces: Helicobacter pylori model, J Clin Microbiol, vol.35, pp.995-998, 1997.

H. Binder, Pathophysiology of acute diarrhea, The American Journal of Medicine, vol.88, issue.6, pp.2-4, 1990.
DOI : 10.1016/0002-9343(90)90267-H

E. Fabian, P. Kump, and G. Krejs, Diarrhea Caused By Circulating Agents, Gastroenterology Clinics of North America, vol.41, issue.3, pp.603-610, 2012.
DOI : 10.1016/j.gtc.2012.06.008

D. Stewart, M. Tortorello, and S. Gendel, Evaluation of DNA preparation techniques for detection of the SLT-1 gene of Escherichia coli O157 : H7 in bovine faeces using the polymerase chain reaction, Letters in Applied Microbiology, vol.26, issue.2, pp.93-97, 1998.
DOI : 10.1046/j.1472-765X.1998.00279.x

V. Sharma and S. Carlson, Simultaneous Detection of Salmonella Strains and Escherichia coli O157:H7 with Fluorogenic PCR and Single-Enrichment-Broth Culture, Applied and Environmental Microbiology, vol.66, issue.12, pp.5472-5476, 2000.
DOI : 10.1128/AEM.66.12.5472-5476.2000

E. Zoetendal, H. Heilig, E. Klaassens, C. Booijink, M. Kleerebezem et al., Isolation of DNA from bacterial samples of the human gastrointestinal tract, Nature Protocols, vol.13, issue.2, pp.870-873, 2006.
DOI : 10.1078/0723-2020-00060

B. Machiels, T. Ruers, M. Lindhout, K. Hardy, T. Hlavaty et al., New protocol for DNA extraction of stool, Biotechniques, vol.28, pp.286-290, 2000.

R. Ruiz and L. Rubio, Lyophilisation improves the extraction of PCR-quality community DNA from pig faecal samples, Journal of the Science of Food and Agriculture, vol.72, issue.4, pp.723-727, 2009.
DOI : 10.1002/jsfa.3465

D. Rapp, J. Waller, G. Brightwell, and R. Muirhead, Lyophilization Prior to Direct DNA Extraction from Bovine Feces Improves the Quantification of Escherichia coli O157:H7 and Campylobacter jejuni, Applied and Environmental Microbiology, vol.76, issue.5, pp.1686-1688, 2010.
DOI : 10.1128/AEM.01866-09

S. Cohen-bacrie, L. Ninove, A. Nougairède, R. Charrel, H. Richet et al., Revolutionizing Clinical Microbiology Laboratory Organization in Hospitals with In Situ Point-of-Care, PLoS ONE, vol.4, issue.827, p.22403, 2011.
DOI : 10.1371/journal.pone.0022403.s004

M. Blaser and L. Newman, A Review of Human Salmonellosis: I. Infective Dose, Clinical Infectious Diseases, vol.4, issue.6, pp.1096-1106, 1982.
DOI : 10.1093/clinids/4.6.1096

P. West, The human pathogenic vibrios ??? A public health update with environmental perspectives, Epidemiology and Infection, vol.23, issue.01, pp.1-34, 1989.
DOI : 10.1001/jama.249.13.1756

X. Koh, C. Chiou, N. Ajam, H. Watanabe, N. Ahmad et al., Characterization of Shigella sonnei in Malaysia, an increasingly prevalent etiologic agent of local shigellosis cases, BMC Infectious Diseases, vol.45, issue.1, p.122, 2012.
DOI : 10.1016/S0732-8893(02)00524-2

B. Dridi, M. Henry, E. Kéchine, A. Raoult, D. Drancourt et al., High prevalence of Methanobrevibacter smithii and Metanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol, PLoS One, vol.9, p.7063, 2009.