A. Apffel, J. A. Chakel, S. Fischer, K. Lichtenwalter, and W. S. Hancock, Analysis of Oligonucleotides by HPLC???Electrospray Ionization Mass Spectrometry, Analytical Chemistry, vol.69, issue.7, pp.1320-1325, 1997.
DOI : 10.1021/ac960916h

A. Bakin and J. Ofengand, Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique, Biochemistry, vol.32, issue.37, pp.9754-9762, 1993.
DOI : 10.1021/bi00088a030

G. R. Björk, The role of modified nucleosides in tRNA interactions, Transfer RNA in Protein Synthesis, pp.23-85, 1992.

P. F. Crain, [42] Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry, Methods Enzymol, vol.193, pp.782-790, 1990.
DOI : 10.1016/0076-6879(90)93450-Y

P. Davanloo, M. Sprinzl, K. Watanabe, M. Albani, and H. Kersten, Role of ribothymidine in the thermal stability of transfer RNA as monitored by proton magnetic resonance, Nucleic Acids Research, vol.6, issue.4, pp.1571-1581, 1979.
DOI : 10.1093/nar/6.4.1571

R. Denman, J. Colgan, K. Nurse, and J. Ofengand, 16S RNA does not require the participation of the 50S subunit, Nucleic Acids Research, vol.16, issue.1, pp.165-178, 1988.
DOI : 10.1093/nar/16.1.165

B. Felden, J. F. Atkins, and R. F. Gesteland, tRNA and mRNA both in the same molecule, Nature Structural Biology, vol.91, issue.6, p.494, 1996.
DOI : 10.1038/337478a0

B. Felden, H. Himeno, A. Muto, J. F. Atkins, and R. F. Gesteland, Structural organization of Escherichia coli tmRNA, Biochimie, vol.78, issue.11-12, pp.979-983, 1996.
DOI : 10.1016/S0300-9084(97)86720-X

B. Felden, H. Himeno, A. Muto, J. P. Mccutcheon, J. F. Atkins et al., Probing the structure of the Escherichia coli 10Sa RNA (tmRNA), RNA, vol.3, pp.89-104, 1997.
URL : https://hal.archives-ouvertes.fr/inserm-00814124

J. B. Fenn, M. Mann, C. K. Meng, S. F. Wong, and C. M. Whitehouse, Electrospray ionization for mass spectrometry of large biomolecules, Science, vol.246, issue.4926, pp.64-71, 1989.
DOI : 10.1126/science.2675315

X. R. Gu and D. V. Santi, The T-arm of tRNA is a substrate for tRNA (m5U54)-methyltransferase, Biochemistry, vol.30, issue.12, pp.2999-3002, 1991.
DOI : 10.1021/bi00226a003

S. Hahner, H. Lüdemann, F. Kirpekar, E. Nordhoff, P. Roepstorff et al., Matrix-assisted laser desorption/ionization mass spectrometry (MALDI) of endonuclease digests of RNA, Nucleic Acids Research, vol.25, issue.10, pp.1957-1964, 1997.
DOI : 10.1093/nar/25.10.1957

R. P. Hickerson, C. D. Watkins-sims, C. J. Burrows, J. F. Atkins, R. F. Gesteland et al., A nickel complex cleaves uridine in folded RNA structures: application to E. coli tmRNA and related engineered molecules, Journal of Molecular Biology, vol.279, issue.3, 1998.
DOI : 10.1006/jmbi.1998.1813

URL : https://hal.archives-ouvertes.fr/inserm-00719619

H. Himeno, M. Sato, T. Tadaki, M. Fukushima, C. Ushida et al., In vitro Trans Translation mediated by alanine-charged 10sa RNA, Journal of Molecular Biology, vol.268, issue.5, pp.803-808, 1997.
DOI : 10.1006/jmbi.1997.1011

N. W. Ho and P. T. Gilham, Reaction of pseudouridine and inosine with N-cyclohexyl-N-beta-(4-methylmorpholinium)ethylcarbodiimide, Biochemistry, vol.10, pp.3651-3657, 1971.

Y. Hou and P. Schimmel, A simple structural feature is a major determinant of the identity of a transfer RNA, Nature, vol.333, issue.6169, pp.140-145, 1988.
DOI : 10.1038/333140a0

S. K. Jain, M. Gurevitz, and D. Apirion, A small RNA that complements mutants in the RNA processing enzyme ribonuclease P, Journal of Molecular Biology, vol.162, issue.3, pp.515-533, 1982.
DOI : 10.1016/0022-2836(82)90386-2

H. O. Kammen, C. C. Marvel, L. Hardy, and E. E. Penhoet, Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I, J. Biol. Chem, vol.263, pp.2255-2263, 1988.

J. T. Kealey and D. V. Santi, High-Level Expression and Rapid Purification of tRNA (m5U54)-Methyltransferase, Protein Expression and Purification, vol.5, issue.2, pp.149-152, 1994.
DOI : 10.1006/prep.1994.1023

K. C. Keiler, P. R. Waller, and R. T. Sauer, Role of a Peptide Tagging System in Degradation of Proteins Synthesized from Damaged Messenger RNA, Science, vol.271, issue.5251, pp.990-993, 1996.
DOI : 10.1126/science.271.5251.990

Y. Komine, M. Kitabatake, T. Yokogawa, K. Nishikawa, and H. Inokuchi, A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli., Proc. Natl Acad. Sci. USA, pp.9223-9227, 1994.
DOI : 10.1073/pnas.91.20.9223

J. A. Kowalak, S. C. Pomerantz, P. F. Crain, and J. A. Mccloskey, A novel method for the determination of posttranscriptional modification in RNA by mass spectrometry, Nucleic Acids Research, vol.21, issue.19, pp.4577-4585, 1993.
DOI : 10.1093/nar/21.19.4577

S. Y. Lee, S. C. Bailey, and D. Apirion, Small stable RNAs from Escherichia coli: evidence for the existence of new molecules and for a new ribonucleoprotein particle containing 6S RNA, J. Bacteriol, vol.133, pp.1015-1023, 1978.

W. H. Mcclain and K. Foss, Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end, Science, vol.240, issue.4853, pp.793-796, 1988.
DOI : 10.1126/science.2452483

J. A. Mccloskey, MASS SPECTROMETRY, Basic Principles in Nucleic Acid Chemistry, pp.209-309, 1974.
DOI : 10.1016/B978-0-12-701901-7.50008-2

J. A. Mccloskey and P. F. Crain, The RNA modification database--1998, Nucleic Acids Research, vol.26, issue.1, pp.196-197, 1998.
DOI : 10.1093/nar/26.1.196

K. Nurse, J. Wrzesinski, A. Bakin, B. G. Lane, and J. Ofengand, Purification, cloning, and properties of the tRNA psi 55 synthase from Escherichia coli, RNA, vol.1, pp.102-112, 1995.

S. C. Pomerantz and J. A. Mccloskey, [44] Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry, Methods Enzymol, vol.193, pp.796-824, 1990.
DOI : 10.1016/0076-6879(90)93452-Q

S. C. Pomerantz, J. A. Kowalak, and J. A. Mccloskey, Determination of oligonucleotide composition from mass spectrometrically measured molecular weight, Journal of the American Society for Mass Spectrometry, vol.129, issue.3, pp.204-2090, 1993.
DOI : 10.1016/1044-0305(93)85082-9

A. Ramos and G. Varani, Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition, Nucleic Acids Research, vol.25, issue.11, pp.2083-2090, 1997.
DOI : 10.1093/nar/25.11.2083

B. K. Ray and D. Apirion, Characterization of 10S RNA: A new stable RNA molecule from Escherichia coli, Mgg Molecular & General Genetics, vol.247, issue.1, pp.25-32, 1979.
DOI : 10.1007/BF00433301

M. Sprinzl, C. Horn, M. Brown, A. Ioudovitch, and S. Steinberg, Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Research, vol.26, issue.1, pp.148-153, 1998.
DOI : 10.1093/nar/26.1.148

URL : https://hal.archives-ouvertes.fr/hal-00356160

F. L. Suddath, G. J. Quigley, A. Mcpherson, D. Sneden, J. J. Kim et al., Three-dimensional structure of yeast phenylalanine transfer RNA at 3. 0??? resolution, Nature, vol.97, issue.5443, pp.20-24, 1974.
DOI : 10.1038/248020a0

K. Tamura, H. Asahara, H. Himeno, T. Hasegawa, and M. Shimizu, Identity elements ofEscherichia coli tRNAAla, Journal of Molecular Recognition, vol.55, issue.4, pp.129-132, 1991.
DOI : 10.1002/jmr.300040404

G. F. Tu, G. E. Reid, J. G. Zhang, R. L. Moritz, and R. J. Simpson, Cterminal extension of truncated recombinant proteins in Escherichia coli with 10Sa RNA decapeptide, J. Biol. Chem, vol.270, pp.9322-9326, 1995.

K. P. Williams and D. P. Bartel, Phylogenetic analysis of tmRNA secondary structures, RNA, vol.2, pp.1306-1310, 1996.

K. P. Williams and D. P. Bartel, The tmRNA Website, Nucleic Acids Research, vol.26, issue.1, pp.163-165, 1998.
DOI : 10.1093/nar/26.1.163

C. Zweib, N. Larsen, and J. Wower, The tmRNA database (tmRDB), Nucleic Acids Research, vol.26, issue.1, pp.166-167, 1998.
DOI : 10.1093/nar/26.1.166