M. Sultan, M. Schulz, H. Richard, A. Magen, and A. Klingenhoff, A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome, Science, vol.321, issue.5891, pp.956-960, 2008.
DOI : 10.1126/science.1160342

A. Mortazavi, B. Williams, K. Mccue, L. Schaeffer, and B. Wold, Mapping and quantifying mammalian transcriptomes by RNA-Seq, Nature Methods, vol.14, issue.7, pp.621-628, 2008.
DOI : 10.1038/nmeth.1226

P. Kapranov, S. Cawley, J. Drenkow, S. Bekiranov, and R. Strausberg, Large-Scale Transcriptional Activity in Chromosomes 21 and 22, Science, vol.296, issue.5569, pp.916-919, 2002.
DOI : 10.1126/science.1068597

E. Birney, J. Stamatoyannopoulos, A. Dutta, R. Guigo, and T. Gingeras, Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project, Nature, vol.12, issue.7146, pp.799-816, 2007.
DOI : 10.1038/nature05874

A. Visel, C. Thaller, and G. Eichele, GenePaint.org: an atlas of gene expression patterns in the mouse embryo, Nucleic Acids Research, vol.32, issue.90001, pp.552-556, 2004.
DOI : 10.1093/nar/gkh029

A. Reymond, V. Marigo, M. Yaylaoglu, A. Leoni, and C. Ucla, Human chromosome 21 gene expression atlas in the mouse, Nature, vol.3, issue.6915, pp.582-586, 2002.
DOI : 10.1038/nature01178

Y. Gitton, N. Dahmane, S. Baik, A. Ruiz-i-altaba, and L. Neidhardt, A gene expression map of human chromosome 21 orthologues in the mouse, Nature, vol.9, issue.6915, pp.586-590, 2002.
DOI : 10.1038/nature01270

E. Lein, M. Hawrylycz, N. Ao, M. Ayres, and A. Bensinger, Genome-wide atlas of gene expression in the adult mouse brain, Nature, vol.22, issue.7124, pp.168-176, 2007.
DOI : 10.1002/cne.20426

E. Brunskill, B. Aronow, K. Georgas, B. Rumballe, and M. Valerius, Atlas of Gene Expression in the Developing Kidney at Microanatomic Resolution, Developmental Cell, vol.15, issue.5, pp.781-791, 2008.
DOI : 10.1016/j.devcel.2008.09.007

S. Magdaleno, P. Jensen, C. Brumwell, A. Seal, and K. Lehman, BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System, PLoS Biology, vol.7, issue.4, 2006.
DOI : 10.1371/journal.pbio.0040086.sg003

S. Gong, C. Zheng, M. Doughty, K. Losos, and N. Didkovsky, A gene expression atlas of the central nervous system based on bacterial artificial chromosomes, Nature, vol.425, issue.6961, pp.917-925, 2003.
DOI : 10.1038/nature02033

J. Christiansen, Y. Yang, S. Venkataraman, L. Richardson, and P. Stevenson, EMAGE: a spatial database of gene expression patterns during mouse embryo development, Nucleic Acids Research, vol.34, issue.90001, pp.637-641, 2006.
DOI : 10.1093/nar/gkj006

D. Hill, D. Begley, J. Finger, T. Hayamizu, and I. Mccright, The mouse Gene Expression Database (GXD): updates and enhancements, Nucleic Acids Research, vol.32, issue.90001, pp.568-571, 2004.
DOI : 10.1093/nar/gkh069

URL : http://doi.org/10.1093/nar/gkh069

E. Lecuyer, H. Yoshida, N. Parthasarathy, C. Alm, and T. Babak, Global Analysis of mRNA Localization Reveals a Prominent Role in Organizing Cellular Architecture and Function, Cell, vol.131, issue.1, pp.174-187, 2007.
DOI : 10.1016/j.cell.2007.08.003

P. Tomancak, B. Berman, A. Beaton, R. Weiszmann, and E. Kwan, Global analysis of patterns of gene expression during Drosophila embryogenesis, Genome Biology, vol.8, issue.7, p.145, 2007.
DOI : 10.1186/gb-2007-8-7-r145

J. Carson, C. Thaller, and G. Eichele, A transcriptome atlas of the mouse brain at cellular resolution, Current Opinion in Neurobiology, vol.12, issue.5, pp.562-565, 2002.
DOI : 10.1016/S0959-4388(02)00356-2

M. Ringwald, R. Baldock, J. Bard, M. Kaufman, and J. Eppig, A database for mouse development, Science, vol.265, issue.5181, pp.2033-2034, 1994.
DOI : 10.1126/science.8091224

M. Yaylaoglu, A. Titmus, A. Visel, G. Alvarez-bolado, and C. Thaller, Comprehensive expression atlas of fibroblast growth factors and their receptors generated by a novel robotic in situ hybridization platform, Developmental Dynamics, vol.271, issue.2, pp.371-386, 2005.
DOI : 10.1002/dvdy.20441

A. Visel, J. Carson, J. Oldekamp, M. Warnecke, and V. Jakubcakova, Regulatory Pathway Analysis by High-Throughput In Situ Hybridization, PLoS Genetics, vol.58, issue.10, 2007.
DOI : 10.1371/journal.pgen.0030178.st004

L. Madisen, T. Zwingman, S. Sunkin, S. Oh, and H. Zariwala, A robust and high-throughput Cre reporting and characterization system for the whole mouse brain, Nature Neuroscience, vol.1, issue.1, pp.133-140, 2010.
DOI : 10.1038/nn.2467

R. Van-amerongen and R. Nusse, Towards an integrated view of Wnt signaling in development, Development, vol.136, issue.19, pp.3205-3214, 2009.
DOI : 10.1242/dev.033910

K. Schmidt-ott and J. Barasch, WNT/??-catenin signaling in nephron progenitors and their epithelial progeny, Kidney International, vol.74, issue.8, pp.1004-1008, 2008.
DOI : 10.1038/ki.2008.322

URL : http://doi.org/10.1038/ki.2008.322

C. Merkel, C. Karner, and T. Carroll, Molecular regulation of kidney development: is the answer blowing in the Wnt?, Pediatric Nephrology, vol.81, issue.Suppl 9, pp.1825-1838, 2007.
DOI : 10.1007/s00467-007-0504-4

F. Lemaigre, Mechanisms of Liver Development: Concepts for Understanding Liver Disorders and Design of Novel Therapies, Gastroenterology, vol.137, issue.1, pp.62-79, 2009.
DOI : 10.1053/j.gastro.2009.03.035

S. Orkin and L. Zon, Hematopoiesis: An Evolving Paradigm for Stem Cell Biology, Cell, vol.132, issue.4, pp.631-644, 2008.
DOI : 10.1016/j.cell.2008.01.025

URL : http://doi.org/10.1016/j.cell.2008.01.025

J. Christensen, D. Wright, A. Wagers, and I. Weissman, Circulation and Chemotaxis of Fetal Hematopoietic Stem Cells, PLoS Biology, vol.393, issue.3, 2004.
DOI : 10.1371/journal.pbio.0020075.t002

H. Mikkola and S. Orkin, The journey of developing hematopoietic stem cells, Development, vol.133, issue.19, pp.3733-3744, 2006.
DOI : 10.1242/dev.02568

D. Torre, D. Sanguinetto, S. Dasen, J. Arber, and S. , Transcriptional mechanisms controlling motor neuron diversity and connectivity, Curr Opin Neurobiol, vol.18, pp.36-43, 2008.

B. Rexed, The cytoarchitectonic organization of the spinal cord in the cat, The Journal of Comparative Neurology, vol.4, issue.1, pp.414-495, 1952.
DOI : 10.1002/cne.900960303

A. Martinez-ferre and S. Martinez, The Development of the Thalamic Motor Learning Area Is Regulated by Fgf8 Expression, Journal of Neuroscience, vol.29, issue.42, pp.13389-13400, 2009.
DOI : 10.1523/JNEUROSCI.2625-09.2009

L. Puelles and J. Rubenstein, Forebrain gene expression domains and the evolving prosomeric model, Trends in Neurosciences, vol.26, issue.9, pp.469-476, 2003.
DOI : 10.1016/S0166-2236(03)00234-0

M. Figdor and C. Stern, Segmental organization of embryonic diencephalon, Nature, vol.363, issue.6430, pp.630-634, 1993.
DOI : 10.1038/363630a0

J. Rubenstein, S. Martinez, K. Shimamura, and L. Puelles, The embryonic vertebrate forebrain: the prosomeric model, Science, vol.266, issue.5185, pp.578-580, 1994.
DOI : 10.1126/science.7939711

T. Shimogori, D. Lee, A. Miranda-angulo, Y. Yang, and H. Wang, A genomic atlas of mouse hypothalamic development, Nature Neuroscience, vol.9, issue.6, pp.767-775, 2010.
DOI : 10.1038/nn.2545

L. Puelles, Contributions to Neuroembryology of Santiago Ramon y Cajal (1852-1934) and Jorge F. Tello (1880-1958), The International Journal of Developmental Biology, vol.53, issue.8-9-10, pp.1145-1160, 2009.
DOI : 10.1387/ijdb.082589lp

C. Vieira and S. Martinez, Sonic hedgehog from the basal plate and the zona limitans intrathalamica exhibits differential activity on diencephalic molecular regionalization and nuclear structure, Neuroscience, vol.143, issue.1, pp.129-140, 2006.
DOI : 10.1016/j.neuroscience.2006.08.032

E. Garcia-calero, P. Fernandez-garre, S. Martinez, and L. Puelles, Early mammillary pouch specification in the course of prechordal ventralization of the forebrain tegmentum, Developmental Biology, vol.320, issue.2, pp.366-377, 2008.
DOI : 10.1016/j.ydbio.2008.05.545

S. Halford, S. Pires, M. Turton, L. Zheng, and I. Gonzalez-menendez, VA Opsin-Based Photoreceptors in the Hypothalamus of Birds, Current Biology, vol.19, issue.16, pp.1396-1402, 2009.
DOI : 10.1016/j.cub.2009.06.066

R. Nieuwenhuys, The Morphological Pattern of the Vertebrate Brain, European Journal of Morphology, vol.37, issue.0, pp.81-84, 1999.
DOI : 10.1076/ejom.

N. Danbolt, Glutamate uptake, Progress in Neurobiology, vol.65, issue.1, pp.1-105, 2001.
DOI : 10.1016/S0301-0082(00)00067-8