D. Murray, S. Roller, H. Kuriyama, and D. Lloyd, Clock Control of Ultradian Respiratory Oscillation Found during Yeast Continuous Culture, Journal of Bacteriology, vol.183, issue.24, pp.7253-7259, 2001.
DOI : 10.1128/JB.183.24.7253-7259.2001

M. Palumbo, L. Farina, D. Santis, A. Giuliani, A. Colosimo et al., Collective behavior in gene regulation: Post-transcriptional regulation and the temporal compartmentalization of cellular cycles, FEBS Journal, vol.176, issue.10, pp.2364-2371, 2008.
DOI : 10.1111/j.1742-4658.2008.06398.x

B. Tu, A. Kudlicki, M. Rowicka, and S. Mcknight, Logic of the Yeast Metabolic Cycle: Temporal Compartmentalization of Cellular Processes, Science, vol.310, issue.5751, pp.1152-1158, 2005.
DOI : 10.1126/science.1120499

D. Lloyd, L. Salgado, M. Turner, M. Suller, and D. Murray, Cycles of mitochondrial energization driven by the ultradian clock in a continuous culture of Saccharomyces cerevisiae, Microbiology, vol.148, issue.11, pp.3715-3724, 2002.
DOI : 10.1099/00221287-148-11-3715

R. Klevecz, C. Li, I. Marcus, and P. Frankel, Collective behavior in gene regulation: The cell is an oscillator, the cell cycle a developmental process, FEBS Journal, vol.100, issue.10, pp.2372-2384, 2008.
DOI : 10.1111/j.1742-4658.2008.06399.x

T. Moloshok, R. Klevecz, J. Grant, F. Manion, and W. Speier, Application of Bayesian Decomposition for analysing microarray data, Bioinformatics, vol.18, issue.4, pp.566-575, 2002.
DOI : 10.1093/bioinformatics/18.4.566

J. Keene, RNA regulons: coordination of post-transcriptional events, Nature Reviews Genetics, vol.103, issue.7, pp.533-543, 2007.
DOI : 10.1038/nrg2111

A. Mckee and P. Silver, Systems perspectives on mRNA processing, Cell Research, vol.434, issue.7, pp.581-590, 2007.
DOI : 10.1038/cr.2007.54

T. Barrett, D. Troup, S. Wilhite, P. Ledoux, and D. Rudnev, NCBI GEO: archive for high-throughput functional genomic data, Nucleic Acids Research, vol.37, issue.Database, 2008.
DOI : 10.1093/nar/gkn764

Y. Saint-georges, M. Garcia, T. Delaveau, L. Jourdren, L. Crom et al., Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization, PLoS ONE, vol.98, issue.6, 2008.
DOI : 10.1371/journal.pone.0002293.s012
URL : https://hal.archives-ouvertes.fr/hal-00333137

B. Foat, A. Morozov, and H. Bussemaker, Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE, Bioinformatics, vol.22, issue.14, pp.141-149, 2006.
DOI : 10.1093/bioinformatics/btl223

B. Foat, S. Houshmandi, W. Olivas, and H. Bussemaker, Profiling condition-specific, genome-wide regulation of mRNA stability in yeast, Proceedings of the National Academy of Sciences, vol.102, issue.49, pp.17675-17680, 2005.
DOI : 10.1073/pnas.0503803102

E. Boyle, S. Weng, J. Gollub, H. Jin, and D. Botstein, GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes, Bioinformatics, vol.20, issue.18, pp.3710-3715, 2004.
DOI : 10.1093/bioinformatics/bth456

P. Monteiro, N. Mendes, M. Teixeira, S. Orey, and S. Tenreiro, YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae, Nucleic Acids Research, vol.36, issue.Database, pp.132-136, 2008.
DOI : 10.1093/nar/gkm976

M. Claisse, G. Pere-aubert, L. Clavilier, and P. Slonimski, Methode d'estimation de la concentration des cytochromes dans les cellules entieres de levure, European Journal of Biochemistry, vol.236, issue.3, pp.430-438, 1970.
DOI : 10.1007/BF00272801

A. Barrientos, D. Korr, and A. Tzagoloff, Shy1p is necessary for full expression of mitochondrial COX1 in the yeast model of Leigh's syndrome, The EMBO Journal, vol.21, issue.1, pp.43-52, 2002.
DOI : 10.1093/emboj/21.1.43

A. Gerber, D. Herschlag, and P. Brown, Extensive Association of Functionally and Cytotopically Related mRNAs with Puf Family RNA-Binding Proteins in Yeast, PLoS Biology, vol.390, issue.3, 2004.
DOI : 10.1371/journal.pbio.0020079.st011

V. Contamine and M. Picard, Maintenance and Integrity of the Mitochondrial Genome: a Plethora of Nuclear Genes in the Budding Yeast, Microbiology and Molecular Biology Reviews, vol.64, issue.2, pp.281-315, 2000.
DOI : 10.1128/MMBR.64.2.281-315.2000

R. Klevecz, J. Bolen, G. Forrest, and D. Murray, A genomewide oscillation in transcription gates DNA replication and cell cycle, Proceedings of the National Academy of Sciences, vol.101, issue.5, pp.1200-1205, 2004.
DOI : 10.1073/pnas.0306490101

W. Olivas and R. Parker, The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast, The EMBO Journal, vol.19, issue.23, pp.6602-6611, 2000.
DOI : 10.1093/emboj/19.23.6602

L. Garcia-rodriguez, A. Gay, and L. Pon, Puf3p, a Pumilio family RNA binding protein, localizes to mitochondria and regulates mitochondrial biogenesis and motility in budding yeast, The Journal of Cell Biology, vol.3, issue.2, pp.197-207, 2007.
DOI : 10.1038/37297

F. Fontanesi, I. Soto, and A. Barrientos, Cytochrome c oxidase biogenesis: New levels of regulation, IUBMB Life, 2008.

L. Nijtmans, J. Taanman, A. Muijsers, D. Speijer, and C. Van-den-bogert, Assembly of cytochrome-c oxidase in cultured human cells, European Journal of Biochemistry, vol.254, issue.2, pp.389-394, 1998.
DOI : 10.1046/j.1432-1327.1998.2540389.x

M. Barros, A. Myers, S. Van-driesche, and A. Tzagoloff, COX24 Codes for a Mitochondrial Protein Required for Processing of the COX1 Transcript, Journal of Biological Chemistry, vol.281, issue.6, pp.3743-3751, 2006.
DOI : 10.1074/jbc.M510778200

F. Fontanesi, I. Soto, D. Horn, and A. Barrientos, Assembly of mitochondrial cytochrome c-oxidase, a complicated and highly regulated cellular process, AJP: Cell Physiology, vol.291, issue.6, 2006.
DOI : 10.1152/ajpcell.00233.2006

S. Buschlen, J. Amillet, B. Guiard, A. Fournier, and C. Marcireau, HAP Complex, a Key Regulator of Mitochondrial Function, Coordinates Nuclear and Mitochondrial Gene Expression, Comparative and Functional Genomics, vol.10, issue.1, pp.37-46, 2003.
DOI : 10.1002/cfg.254

N. Bonander, C. Ferndahl, P. Mostad, M. Wilks, and C. Chang, Transcriptome analysis of a respiratory Saccharomycescerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1, BMC Genomics, vol.9, issue.1, p.365, 2008.
DOI : 10.1186/1471-2164-9-365

T. Hon, A. Dodd, R. Dirmeier, N. Gorman, and P. Sinclair, A Mechanism of Oxygen Sensing in Yeast: MULTIPLE OXYGEN-RESPONSIVE STEPS IN THE HEME BIOSYNTHETIC PATHWAY AFFECT Hap1 ACTIVITY, Journal of Biological Chemistry, vol.278, issue.50, pp.50771-50780, 2003.
DOI : 10.1074/jbc.M303677200

M. Hickman and F. Winston, Heme Levels Switch the Function of Hap1 of Saccharomyces cerevisiae between Transcriptional Activator and Transcriptional Repressor, Molecular and Cellular Biology, vol.27, issue.21, pp.7414-7424, 2007.
DOI : 10.1128/MCB.00887-07

D. Lloyd and D. Murray, Ultradian metronome: timekeeper for orchestration of cellular coherence, Trends in Biochemical Sciences, vol.30, issue.7, pp.373-377, 2005.
DOI : 10.1016/j.tibs.2005.05.005

J. Izquierdo, Control of the ATP synthase ?? subunit expression by RNA-binding proteins TIA-1, TIAR, and HuR, Biochemical and Biophysical Research Communications, vol.348, issue.2, pp.703-711, 2006.
DOI : 10.1016/j.bbrc.2006.07.114

M. Martinez-diez, G. Santamaria, A. Ortega, and J. Cuezva, Biogenesis and dynamics of mitochondria during the cell cycle: significance of 39UTRs, PLoS ONE, vol.1, 2006.