C. Lengauer, K. Kinzler, and B. Vogelstein, Genetic instabilities in human cancers, Nature, vol.396, issue.6712, pp.643-649, 1998.
DOI : 10.1038/25292

D. Albertson, C. Collins, F. Mccormick, and J. Gray, Chromosome aberrations in solid tumors, Nature Genetics, vol.34, issue.4, pp.369-376, 2003.
DOI : 10.1038/ng1215

B. Weaver and D. Cleveland, The Aneuploidy Paradox in Cell Growth and Tumorigenesis, Cancer Cell, vol.14, issue.6, pp.431-433, 2008.
DOI : 10.1016/j.ccr.2008.11.011

J. Marx, Debate Surges Over the Origins of Genomic Defects in Cancer, Science, vol.297, issue.5581, pp.544-546, 2002.
DOI : 10.1126/science.297.5581.544

J. Babu, K. Jeganathan, D. Baker, X. Wu, N. Kang-decker et al., Rae1 is an essential mitotic checkpoint regulator that cooperates with Bub3 to prevent chromosome missegregation, The Journal of Cell Biology, vol.15, issue.3, pp.341-353, 2003.
DOI : 10.1128/MCB.21.13.4219-4232.2001

D. Baker, K. Jeganathan, J. Cameron, M. Thompson, S. Juneja et al., BubR1 insufficiency causes early onset of aging-associated phenotypes and infertility in mice, Nature Genetics, vol.8, issue.7, pp.744-749, 2004.
DOI : 10.1126/science.1063665

L. Michel, V. Liberal, A. Chatterjee, R. Kirchwegger, B. Pasche et al., haplo-insufficiency causes premature anaphase and chromosome instability in mammalian cells, Nature, vol.409, pp.2355-359, 2001.

C. Chen and R. Kolodner, Gross chromosomal rearrangements in Saccharomyces cerevisiae replication and recombination defective mutants, Nat Genet, vol.23, pp.81-85, 1999.

M. Dunham, H. Badrane, T. Ferea, J. Adams, P. Brown et al., Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae, Proceedings of the National Academy of Sciences, vol.99, issue.25, pp.16144-16149, 2002.
DOI : 10.1073/pnas.242624799

E. Torres, T. Sokolsky, C. Tucker, L. Chan, M. Boselli et al., Effects of Aneuploidy on Cellular Physiology and Cell Division in Haploid Yeast, Science, vol.317, issue.5840, pp.916-924, 2007.
DOI : 10.1126/science.1142210

N. Pavelka, G. Rancati, J. Zhu, W. Bradford, A. Saraf et al., Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast, Nature, vol.5, issue.7321, pp.321-325, 2010.
DOI : 10.1038/nature09529

D. Nikitin, V. Tosato, A. Zavec, and C. Bruschi, Cellular and molecular effects of nonreciprocal chromosome translocations in Saccharomyces cerevisiae, Proceedings of the National Academy of Sciences, vol.105, issue.28, pp.9703-9708, 2008.
DOI : 10.1073/pnas.0800464105

T. Hughes, C. Roberts, H. Dai, A. Jones, M. Meyer et al., Widespread aneuploidy revealed by DNA microarray expression profiling, Nat Genet, vol.25, pp.333-337, 2000.

E. Torres, N. Dephoure, A. Panneerselvam, C. Tucker, C. Whittaker et al., Identification of Aneuploidy-Tolerating Mutations, Cell, vol.143, issue.1, pp.71-83, 2010.
DOI : 10.1016/j.cell.2010.08.038

E. Torres, B. Williams, and A. Amon, Aneuploidy: Cells Losing Their Balance, Genetics, vol.179, issue.2, pp.737-746, 2008.
DOI : 10.1534/genetics.108.090878

R. Veitia, Exploring the etiology of haploinsufficiency, BioEssays, vol.63, issue.2, pp.175-184, 2002.
DOI : 10.1002/bies.10023

B. Papp, C. Pál, and L. Hurst, Dosage sensitivity and the evolution of gene families in yeast, Nature, vol.424, issue.6945, pp.194-197, 2003.
DOI : 10.1038/nature01771

F. Roelants, S. Potier, J. Souciet, and J. De-montigny, Reactivation of the ATCase domain of the URA2 gene complex: a positive selection method for Ty insertions and chromosomal rearrangements in Saccharomyces cerevisiae, Molecular and General Genetics MGG, vol.101, issue.6, pp.767-773, 1995.
DOI : 10.1007/BF00290725

J. Schacherer, Y. Tourrette, J. Souciet, S. Potier, D. Montigny et al., Recovery of a Function Involving Gene Duplication by Retroposition in Saccharomyces cerevisiae, Genome Research, vol.14, issue.7, pp.1291-1297, 2004.
DOI : 10.1101/gr.2363004
URL : https://hal.archives-ouvertes.fr/hal-00115395

J. Schacherer, Y. Tourrette, S. Potier, J. Souciet, and J. De-montigny, Spontaneous duplications in diploid Saccharomyces cerevisiae cells, DNA Repair, vol.6, issue.10, pp.1441-1452, 2007.
DOI : 10.1016/j.dnarep.2007.04.006
URL : https://hal.archives-ouvertes.fr/hal-00266696

Y. Tourrette, J. Schacherer, E. Fritsch, S. Potier, J. Souciet et al., Spontaneous deletions and reciprocal translocations in Saccharomyces cerevisiae: influence of ploidy, Molecular Microbiology, vol.166, issue.2, pp.382-395, 2007.
DOI : 10.1111/j.1365-2958.2007.05660.x
URL : https://hal.archives-ouvertes.fr/hal-00150443

A. Welcker, J. De-montigny, S. Potier, and J. Souciet, Involvement of very short DNA tandem repeats and the influence of the RAD52 gene on the occurrence of deletions in Saccharomyces cerevisiae, Genetics, vol.156, pp.549-557, 2000.

J. Schacherer, J. De-montigny, A. Welcker, J. Souciet, and S. Potier, Duplication processes in Saccharomyces cerevisiae haploid strains, Nucleic Acids Research, vol.33, issue.19, pp.6319-6326, 2005.
DOI : 10.1093/nar/gki941
URL : https://hal.archives-ouvertes.fr/hal-00370773

D. Cavalieri, J. Townsend, and D. Hartl, Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis, Proceedings of the National Academy of Sciences, vol.97, issue.22, pp.12369-12374, 2000.
DOI : 10.1073/pnas.210395297

J. Granek and P. Magwene, Environmental and Genetic Determinants of Colony Morphology in Yeast, PLoS Genetics, vol.14, issue.1, p.1000823, 2010.
DOI : 10.1371/journal.pgen.1000823.s010

T. Galitski, A. Saldanha, C. Styles, E. Lander, and G. Fink, Ploidy Regulation of Gene Expression, Science, vol.285, issue.5425, pp.251-254, 1999.
DOI : 10.1126/science.285.5425.251

B. Rossi, P. Noel, and C. Bruschi, Different Aneuploidies Arise From the Same Bridge-Induced Chromosomal Translocation Event in Saccharomyces cerevisiae, Genetics, vol.186, issue.3, pp.775-790, 2010.
DOI : 10.1534/genetics.110.120683

R. Barrales, J. Jimenez, and J. Ibeas, Identification of Novel Activation Mechanisms for FLO11 Regulation in Saccharomyces cerevisiae, Genetics, vol.178, issue.1, pp.145-156, 2008.
DOI : 10.1534/genetics.107.081315

E. Boyle, S. Weng, J. Gollub, H. Jin, D. Botstein et al., GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes, Bioinformatics, vol.20, issue.18, pp.3710-3715, 2004.
DOI : 10.1093/bioinformatics/bth456

A. Gasch, P. Spellman, C. Kao, O. Eisen, M. Storz et al., Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes, Molecular Biology of the Cell, vol.11, issue.12, pp.4241-4257, 2000.
DOI : 10.1091/mbc.11.12.4241

C. Schüller, J. Brewster, M. Alexander, and M. Gustin, Ruis H: The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiae CTT1 gene, EMBO J, vol.13, pp.4382-4389, 1994.

D. Berry and A. Gasch, Stress-activated Genomic Expression Changes Serve a Preparative Role for Impending Stress in Yeast, Molecular Biology of the Cell, vol.19, issue.11, pp.4580-4587, 2008.
DOI : 10.1091/mbc.E07-07-0680

A. Gasch, Comparative genomics of the environmental stress response in ascomycete fungi, Yeast, vol.68, issue.11, pp.961-976, 2007.
DOI : 10.1002/yea.1512

G. Boguslawski and J. Polazzi, Complete nucleotide sequence of a gene conferring polymyxin B resistance on yeast: similarity of the predicted polypeptide to protein kinases., Proceedings of the National Academy of Sciences, vol.84, issue.16, pp.5848-5852, 1987.
DOI : 10.1073/pnas.84.16.5848

J. Schacherer, D. Ruderfer, D. Gresham, K. Dolinski, D. Botstein et al., Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains, PLoS ONE, vol.118, issue.2, p.322, 2007.
DOI : 10.1371/journal.pone.0000322.s001

A. Deutschbauer and R. Davis, Quantitative trait loci mapped to single-nucleotide resolution in yeast, Nature Genetics, vol.350, issue.12, pp.1333-1340, 2005.
DOI : 10.1038/ng1674

E. Fritsch, J. Schacherer, C. Bleykasten-grosshans, J. Souciet, S. Potier et al., Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae, BMC Genomics, vol.10, issue.1, p.99, 2009.
DOI : 10.1186/1471-2164-10-99
URL : https://hal.archives-ouvertes.fr/hal-00370148

X. Li, J. Schimenti, and B. Tye, Aneuploidy and Improved Growth Are Coincident but Not Causal in a Yeast Cancer Model, PLoS Biology, vol.6, issue.7, p.1000161, 2009.
DOI : 10.1371/journal.pbio.1000161.s006

B. Williams and A. Amon, Aneuploidy: cancer's fatal flaw? Cancer Res, pp.5289-5291, 2009.

T. Barrett and R. Edgar, Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*, Methods Mol Biol, vol.338, pp.175-190, 2006.
DOI : 10.1385/1-59745-097-9:175
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1619899

S. Lemoine, F. Combes, N. Servant, L. Crom, and S. , Goulphar: rapid access and expertise for standard two-color microarray normalization methods, BMC Bioinformatics, vol.7, issue.1, p.467, 2006.
DOI : 10.1186/1471-2105-7-467
URL : https://hal.archives-ouvertes.fr/inserm-00122139

A. Saldanha, Java Treeview--extensible visualization of microarray data, Bioinformatics, vol.20, issue.17, pp.3246-3248, 2004.
DOI : 10.1093/bioinformatics/bth349

A. Saeed, V. Sharov, J. White, J. Li, W. Liang et al., TM4: a free, open-source system for microarray data management and analysis, BioTechniques, vol.34, pp.374-378, 2003.