The tmRDB and SRPDB resources, Nucleic Acids Research, vol.34, issue.90001, pp.163-168, 2006. ,
DOI : 10.1093/nar/gkj142
Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA, Proceedings of the National Academy of Sciences, vol.104, issue.20, pp.8293-8298, 2007. ,
DOI : 10.1073/pnas.0700402104
One SmpB molecule accompanies tmRNA during its passage through the ribosomes, FEBS Letters, vol.13, issue.10, pp.1532-1536, 2008. ,
DOI : 10.1016/j.febslet.2008.03.049
URL : https://hal.archives-ouvertes.fr/inserm-00712144
Structural features of the tmRNA-ribosome interaction, RNA, vol.15, issue.12, pp.2312-2320, 2009. ,
DOI : 10.1261/rna.1584209
tmRNA??SmpB complex mimics native aminoacyl-tRNAs in the A site of stalled ribosomes, Journal of Structural Biology, vol.169, issue.3, pp.342-348, 2010. ,
DOI : 10.1016/j.jsb.2009.10.015
A ratchet-like inter-subunit reorganization of the ribosome during translocation, Nature, vol.406, issue.6793, pp.318-322, 2000. ,
DOI : 10.1038/35018597
Scaffolding as an Organizing Principle in Trans-translation: THE ROLES OF SMALL PROTEIN B AND RIBOSOMAL PROTEIN S1, Journal of Biological Chemistry, vol.282, issue.9, pp.6356-6363, 2007. ,
DOI : 10.1074/jbc.M609658200
URL : https://hal.archives-ouvertes.fr/inserm-00712975
Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB, Nature, vol.424, issue.6949, pp.699-703, 2003. ,
DOI : 10.1038/nature01831
URL : https://hal.archives-ouvertes.fr/inserm-00715072
Small protein B interacts with the large and the small subunits of a stalled ribosome during trans-translation, Nucleic Acids Research, vol.34, issue.6, pp.1935-1943, 2006. ,
DOI : 10.1093/nar/gkl097
URL : https://hal.archives-ouvertes.fr/inserm-00713111
Pre-binding of Small Protein B to a Stalled Ribosome Triggers trans-Translation, Journal of Biological Chemistry, vol.279, issue.25, pp.25978-25985, 2004. ,
DOI : 10.1074/jbc.M314086200
URL : https://hal.archives-ouvertes.fr/inserm-00715041
VMD: Visual molecular dynamics, Journal of Molecular Graphics, vol.14, issue.1, pp.33-38, 1996. ,
DOI : 10.1016/0263-7855(96)00018-5
tmRNA-induced Release of Messenger RNA from Stalled Ribosomes, Journal of Molecular Biology, vol.350, issue.5, pp.897-905, 2005. ,
DOI : 10.1016/j.jmb.2005.05.033
Function of the SmpB Tail in Transfer-messenger RNA Translation Revealed by a Nucleus-encoded Form, Journal of Biological Chemistry, vol.280, issue.7, pp.5503-5509, 2005. ,
DOI : 10.1074/jbc.M409277200
SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA), The EMBO Journal, vol.18, issue.13, pp.3793-3799, 1999. ,
DOI : 10.1093/emboj/18.13.3793
Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome, Proceedings of the National Academy of Sciences, vol.103, issue.44, pp.16484-16489, 2006. ,
DOI : 10.1073/pnas.0607438103
URL : https://hal.archives-ouvertes.fr/hal-01068418
The A-site Finger in 23 S rRNA Acts as a Functional Attenuator for Translocation, Journal of Biological Chemistry, vol.281, issue.43, pp.32303-32309, 2006. ,
DOI : 10.1074/jbc.M607058200
A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation, RNA, vol.13, issue.10, pp.1723-1731, 2007. ,
DOI : 10.1261/rna.604907
Interaction of SmpB with ribosome from directed hydroxyl radical probing, Nucleic Acids Research, vol.35, issue.21, pp.7248-7255, 2007. ,
DOI : 10.1093/nar/gkm677
Determinants on tmRNA for initiating efficient and precise trans-translation: Some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro, RNA, vol.7, issue.7, pp.999-1012, 2001. ,
DOI : 10.1017/S1355838201010342
All-atom empirical force field for nucleic acids: 2) application to molecular dynamics simulations of DNA and RNA in solution, J Comput Chem, vol.21, pp.105-120, 2000. ,
All-atom empirical potential for molecular modeling and dynamics studies of protein, J Phys Chem B, vol.102, pp.3586-3615, 1998. ,
Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations, J Comput Chem, vol.25, pp.1400-1415, 2004. ,
The highest affinity binding site of small protein B on transfer messenger RNA is outside the tRNA domain, RNA, vol.14, issue.9, pp.1761-1772, 2008. ,
DOI : 10.1261/rna.1185808
URL : https://hal.archives-ouvertes.fr/inserm-00706807
The role of upstream sequences in selecting the reading frame on tmRNA, BMC Biology, vol.6, issue.1, p.29, 2008. ,
DOI : 10.1186/1741-7007-6-29
Accurate determination of local defocus and specimen tilt in electron microscopy, Journal of Structural Biology, vol.142, issue.3, pp.334-347, 2003. ,
DOI : 10.1016/S1047-8477(03)00069-8
The tmRNA System for Translational Surveillance and Ribosome Rescue, Annual Review of Biochemistry, vol.76, issue.1, pp.101-124, 2007. ,
DOI : 10.1146/annurev.biochem.75.103004.142733
Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs, FEBS Letters, vol.18, issue.3, pp.345-349, 2000. ,
DOI : 10.1016/S0014-5793(00)01349-1
Ribosome hijacking: a role for small protein B during trans-translation, EMBO reports, vol.10, issue.2, pp.160-165, 2009. ,
DOI : 10.1126/science.1081798
URL : https://hal.archives-ouvertes.fr/inserm-00706654
UCSF Chimera?A visualization system for exploratory research and analysis, Journal of Computational Chemistry, vol.373, issue.13, pp.1605-1612, 2004. ,
DOI : 10.1002/jcc.20084
Scalable molecular dynamics with NAMD, Journal of Computational Chemistry, vol.84, issue.16, pp.1781-1802, 2005. ,
DOI : 10.1002/jcc.20289
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2486339
Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM, Nucleic Acids Research, vol.38, issue.4, pp.1325-1340, 2010. ,
DOI : 10.1093/nar/gkp1057
RNase R degrades non-stop mRNAs selectively in an SmpB-tmRNA-dependent manner, Molecular Microbiology, vol.7, issue.6, pp.1700-1712, 2006. ,
DOI : 10.1093/nar/29.5.1017
What recent ribosome structures have revealed about the mechanism of translation, Nature, vol.20, issue.7268, pp.1234-1242, 2009. ,
DOI : 10.1038/nature08403
Structure of the 70S Ribosome Complexed with mRNA and tRNA, Science, vol.313, issue.5795, pp.1935-1942, 2006. ,
DOI : 10.1126/science.1131127
-translation, FEBS Letters, vol.270, issue.1, pp.74-77, 2002. ,
DOI : 10.1016/S0014-5793(02)02333-5
URL : https://hal.archives-ouvertes.fr/in2p3-00409178
Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM, Journal of Structural Biology, vol.147, issue.3, pp.315-326, 2004. ,
DOI : 10.1016/j.jsb.2004.03.002
EMAN2: An extensible image processing suite for electron microscopy, Journal of Structural Biology, vol.157, issue.1, pp.38-46, 2007. ,
DOI : 10.1016/j.jsb.2006.05.009
Genetic Analysis of the Structure and Function of Transfer Messenger RNA Pseudoknot 1, Journal of Biological Chemistry, vol.281, issue.15, pp.10561-10566, 2006. ,
DOI : 10.1074/jbc.M600167200
Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics, Structure, vol.16, issue.5, pp.673-683, 2008. ,
DOI : 10.1016/j.str.2008.03.005
Molecular dynamics flexible fitting: A practical guide to combine cryo-electron microscopy and X-ray crystallography, Methods, vol.49, issue.2, pp.174-180, 2009. ,
DOI : 10.1016/j.ymeth.2009.04.005
Visualizing tmRNA Entry into a Stalled Ribosome, Science, vol.300, issue.5616, pp.127-130, 2003. ,
DOI : 10.1126/science.1081798
Locking and Unlocking of Ribosomal Motions, Cell, vol.114, issue.1, pp.123-134, 2003. ,
DOI : 10.1016/S0092-8674(03)00476-8
Single-particle electron cryo-microscopy: towards atomic resolution, Quarterly Reviews of Biophysics, vol.33, issue.4, pp.307-369, 2000. ,
DOI : 10.1017/S0033583500003644
A New Generation of the IMAGIC Image Processing System, Journal of Structural Biology, vol.116, issue.1, pp.17-24, 1996. ,
DOI : 10.1006/jsbi.1996.0004
SmpB Contributes to Reading Frame Selection in the Translation of Transfer???Messenger RNA, Journal of Molecular Biology, vol.391, issue.2, pp.275-281, 2009. ,
DOI : 10.1016/j.jmb.2009.06.037
Accommodation of tmRNA-SmpB into stalled ribosomes: A cryo-EM study, RNA, vol.16, issue.2, pp.299-306, 2010. ,
DOI : 10.1261/rna.1757410
URL : https://hal.archives-ouvertes.fr/hal-00493815
Resuming translation on tmRNA: a unique mode of determining a reading frame, The EMBO Journal, vol.18, issue.19, pp.5423-5433, 1999. ,
DOI : 10.1093/emboj/18.19.5423
Transfer-messenger RNA unfolds as it transits the ribosome, RNA, vol.11, issue.5, pp.668-673, 2005. ,
DOI : 10.1261/rna.7269305
Structural basis for messenger RNA movement on the ribosome, Nature, vol.47, issue.7117, pp.391-394, 2006. ,
DOI : 10.1038/nature05281
URL : https://hal.archives-ouvertes.fr/hal-00188236