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Journal articles
SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data
Abstract : We present SVDetect, a program designed to identify genomic structural variations from paired-end and mate-pair next-generation sequencing data produced by the Illumina GA and ABI SOLiD platforms. Applying both sliding-window and clustering strategies, we use anomalously mapped read pairs provided by current short read aligners to localize genomic rearrangements and classify them according to their type, e.g. large insertions–deletions, inversions, duplications and balanced or unbalanced inter-chromosomal translocations. SVDetect outputs predicted structural variants in various file formats for appropriate graphical visualization. Availability: Source code and sample data are available at http://svdetect.sourceforge.net/
Cited literature [5 references]
https://www.hal.inserm.fr/inserm-00508372
Contributor : Bruno Zeitouni <>
Submitted on : Tuesday, August 3, 2010 - 11:43:37 AM
Last modification on : Tuesday, December 8, 2020 - 3:38:39 AM
Long-term archiving on: : Thursday, November 4, 2010 - 10:39:34 AM
Contributor : Bruno Zeitouni <>
Submitted on : Tuesday, August 3, 2010 - 11:43:37 AM
Last modification on : Tuesday, December 8, 2020 - 3:38:39 AM
Long-term archiving on: : Thursday, November 4, 2010 - 10:39:34 AM