A. Smith, Embryo-Derived Stem Cells: Of Mice and Men, Annual Review of Cell and Developmental Biology, vol.17, issue.1, pp.435-462, 2001.
DOI : 10.1146/annurev.cellbio.17.1.435

S. Efroni, R. Duttagupta, J. Cheng, H. Dehghani, and D. Hoeppner, Global Transcription in Pluripotent Embryonic Stem Cells, Cell Stem Cell, vol.2, issue.5, pp.437-447, 2008.
DOI : 10.1016/j.stem.2008.03.021

F. Mohn, M. Weber, M. Rebhan, T. Roloff, and J. Richter, Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors, Molecular Cell, vol.30, issue.6, pp.755-766, 2008.
DOI : 10.1016/j.molcel.2008.05.007

J. Birchler and H. Kavi, MOLECULAR BIOLOGY: Slicing and Dicing for Small RNAs, Science, vol.320, issue.5879, pp.1023-1024, 2008.
DOI : 10.1126/science.1159018

C. Brosnan and O. Voinnet, The long and the short of noncoding RNAs, Current Opinion in Cell Biology, vol.21, issue.3, pp.416-425, 2009.
DOI : 10.1016/j.ceb.2009.04.001

URL : https://hal.archives-ouvertes.fr/hal-00400302

B. Reinhart, F. Slack, M. Basson, A. Pasquinelli, and J. Bettinger, The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans, Nature, vol.403, pp.901-906, 2000.

S. Yekta, I. Shih, and D. Bartel, MicroRNA-Directed Cleavage of HOXB8 mRNA, Science, vol.304, issue.5670, pp.594-596, 2004.
DOI : 10.1126/science.1097434

R. Pillai, S. Bhattacharyya, C. Artus, T. Zoller, and N. Cougot, Inhibition of Translational Initiation by Let-7 MicroRNA in Human Cells, Science, vol.309, issue.5740, pp.1573-1576, 2005.
DOI : 10.1126/science.1115079

M. Valencia-sanchez, J. Liu, G. Hannon, and R. Parker, Control of translation and mRNA degradation by miRNAs and siRNAs, Genes & Development, vol.20, issue.5, pp.515-524, 2006.
DOI : 10.1101/gad.1399806

V. Ambros, MicroRNA Pathways in Flies and Worms, Cell, vol.113, issue.6, pp.673-676, 2003.
DOI : 10.1016/S0092-8674(03)00428-8

B. Zhang, Q. Wang, and X. Pan, MicroRNAs and their regulatory roles in animals and plants, Journal of Cellular Physiology, vol.6, issue.2, pp.279-289, 2007.
DOI : 10.1002/jcp.20869

G. Wheeler, A. Valoczi, Z. Havelda, and T. Dalmay, Detection of Animal and Plant MicroRNAs, DNA and Cell Biology, vol.26, issue.4, pp.251-255, 2007.
DOI : 10.1089/dna.2006.0538

D. Bartel, MicroRNAs, Cell, vol.116, issue.2, pp.281-297, 2004.
DOI : 10.1016/S0092-8674(04)00045-5

URL : https://hal.archives-ouvertes.fr/hal-00369966

H. Seitz and P. Zamore, Rethinking the Microprocessor, Cell, vol.125, issue.5, pp.827-829, 2006.
DOI : 10.1016/j.cell.2006.05.018

N. Bushati and S. Cohen, microRNA Functions, Annual Review of Cell and Developmental Biology, vol.23, issue.1, pp.175-205, 2007.
DOI : 10.1146/annurev.cellbio.23.090506.123406

W. Filipowicz, S. Bhattacharyya, and N. Sonenberg, Mechanisms of posttranscriptional regulation by microRNAs: are the answers in sight, Nat Rev Genet, vol.9, pp.102-114, 2008.

H. Houbaviy, M. Murray, and P. Sharp, Embryonic Stem Cell-Specific MicroRNAs, Developmental Cell, vol.5, issue.2, pp.351-358, 2003.
DOI : 10.1016/S1534-5807(03)00227-2

H. Houbaviy, L. Dennis, R. Jaenisch, and P. Sharp, Characterization of a highly variable eutherian microRNA gene, RNA, vol.11, issue.8, pp.1245-1257, 2005.
DOI : 10.1261/rna.2890305

R. Benetti, S. Gonzalo, I. Jaco, P. Munoz, and S. Gonzalez, A mammalian microRNA cluster controls DNA methylation and telomere recombination via Rbl2-dependent regulation of DNA methyltransferases, Nature Structural & Molecular Biology, vol.2, issue.3, pp.268-279, 2008.
DOI : 10.1038/nsmb.1399

L. Sinkkonen, T. Hugenschmidt, P. Berninger, D. Gaidatzis, and F. Mohn, MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells, Nature Structural & Molecular Biology, vol.12, issue.3, pp.259-267, 2008.
DOI : 10.1038/nsmb.1391

S. Shibata and A. Wutz, Transcript versus transcription?: The regulation of X-inactivation by antisense Tsix expression, Epigenetics, vol.3, issue.5, pp.246-249, 2008.
DOI : 10.4161/epi.3.5.6990

J. Calabrese, A. Seila, G. Yeo, and P. Sharp, RNA sequence analysis defines Dicer's role in mouse embryonic stem cells, Proceedings of the National Academy of Sciences, vol.104, issue.46, pp.18097-18102, 2007.
DOI : 10.1073/pnas.0709193104

C. Chen, D. Ridzon, C. Lee, J. Blake, and Y. Sun, Defining embryonic stem cell identity using differentiation-related microRNAs and their potential targets, Mammalian Genome, vol.365, issue.5, pp.316-327, 2007.
DOI : 10.1007/s00335-007-9032-6

T. Farazi, S. Juranek, and T. Tuschl, The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members, Development, vol.135, issue.7, pp.1201-1214, 2008.
DOI : 10.1242/dev.005629

A. Blakaj and H. Lin, Piecing Together the Mosaic of Early Mammalian Development through MicroRNAs, Journal of Biological Chemistry, vol.283, issue.15, pp.9505-9508, 2008.
DOI : 10.1074/jbc.R800002200

L. Rosa, P. Viara, E. Hupe, P. Pierron, G. Liva et al., VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles, Bioinformatics, vol.22, issue.17, pp.2066-2073, 2006.
DOI : 10.1093/bioinformatics/btl359

URL : https://hal.archives-ouvertes.fr/hal-01199867

P. Landgraf, M. Rusu, R. Sheridan, A. Sewer, and N. Iovino, A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing, Cell, vol.129, issue.7, pp.1401-1414, 2007.
DOI : 10.1016/j.cell.2007.04.040

URL : https://hal.archives-ouvertes.fr/hal-00159802

Y. Tay, J. Zhang, A. Thomson, B. Lim, and I. Rigoutsos, MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation, Nature, vol.280, issue.7216, pp.1124-1128, 2008.
DOI : 10.1038/nature07299

J. Mendell, miRiad Roles for the miR-17-92 Cluster in Development and Disease, Cell, vol.133, issue.2, pp.217-222, 2008.
DOI : 10.1016/j.cell.2008.04.001

Y. Tsuchiya, M. Nakajima, S. Takagi, T. Taniya, and T. Yokoi, MicroRNA Regulates the Expression of Human Cytochrome P450 1B1, Cancer Research, vol.66, issue.18, pp.9090-9098, 2006.
DOI : 10.1158/0008-5472.CAN-06-1403

Y. Wang, R. Medvid, C. Melton, R. Jaenisch, and R. Blelloch, DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal, Nature Genetics, vol.101, issue.3, pp.380-385, 2007.
DOI : 10.1038/1235

Y. Wang, S. Baskerville, A. Shenoy, J. Babiarz, and L. Baehner, Embryonic stem cell???specific microRNAs regulate the G1-S transition and promote rapid proliferation, Nature Genetics, vol.12, issue.12, pp.1478-83, 2008.
DOI : 10.1038/nsmb.1391

K. Okamura, M. Phillips, D. Tyler, H. Duan, and Y. Chou, The regulatory activity of microRNA* species has substantial influence on microRNA and 3??? UTR evolution, Nature Structural & Molecular Biology, vol.15, issue.4, pp.354-363, 2008.
DOI : 10.1101/gad.9.23.2936

R. Judson, J. Babiarz, M. Venere, and R. Blelloch, Embryonic stem cell???specific microRNAs promote induced pluripotency, Nature Biotechnology, vol.24, issue.5, pp.459-461, 2009.
DOI : 10.1038/nbt.1535

G. Michlewski, S. Guil, C. Semple, and J. Caceres, Posttranscriptional Regulation of miRNAs Harboring Conserved Terminal Loops, Molecular Cell, vol.32, issue.3, pp.383-393, 2008.
DOI : 10.1016/j.molcel.2008.10.013

F. Felippes, K. Schneeberger, T. Dezulian, D. Huson, and D. Weigel, Evolution of Arabidopsis thaliana microRNAs from random sequences, RNA, vol.14, issue.12, pp.2455-2459, 2008.
DOI : 10.1261/rna.1149408

Y. Sekita, H. Wagatsuma, K. Nakamura, R. Ono, and M. Kagami, Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta, Nature Genetics, vol.113, issue.2, pp.243-248, 2008.
DOI : 10.1038/ng.2007.51

J. Hua and K. Sidhu, Recent Advances in the Derivation of Germ Cells from the Embryonic Stem Cells, Stem Cells and Development, vol.17, issue.3, pp.399-411, 2008.
DOI : 10.1089/scd.2007.0225

K. Hayashi, C. De-sousa-lopes, S. Kaneda, M. Tang, F. Hajkova et al., MicroRNA Biogenesis Is Required for Mouse Primordial Germ Cell Development and Spermatogenesis, PLoS ONE, vol.69, issue.3, 2008.
DOI : 10.1371/journal.pone.0001738.s007

A. Zovoilis, J. Nolte, N. Drusenheimer, U. Zechner, and H. Hada, Multipotent adult germline stem cells and embryonic stem cells have similar microRNA profiles, Molecular Human Reproduction, vol.14, issue.9, pp.521-529, 2008.
DOI : 10.1093/molehr/gan044

A. Krek, D. Grun, M. Poy, R. Wolf, and L. Rosenberg, Combinatorial microRNA target predictions, Nature Genetics, vol.432, issue.5, pp.495-500, 2005.
DOI : 10.1093/nar/gkh023

A. Fattaey, K. Helin, M. Dembski, N. Dyson, and E. Harlow, Characterization of the retinoblastoma binding proteins RBP1 and RBP2, Oncogene, vol.8, pp.3149-3156, 1993.

T. Fleischer, U. Yun, and D. Ayer, Identification and Characterization of Three New Components of the mSin3A Corepressor Complex, Molecular and Cellular Biology, vol.23, issue.10, pp.3456-3467, 2003.
DOI : 10.1128/MCB.23.10.3456-3467.2003

V. Kim, Cell cycle micromanagement in embryonic stem cells, Nature Genetics, vol.40, issue.12, pp.1391-1392, 2008.
DOI : 10.1016/j.cell.2006.02.037

S. Pfeffer, Identification of Virally Encoded MicroRNAs, Methods Enzymol, vol.427, pp.51-63, 2007.
DOI : 10.1016/S0076-6879(07)27003-X

URL : https://hal.archives-ouvertes.fr/hal-00176631

C. Himber, P. Dunoyer, G. Moissiard, C. Ritzenthaler, and O. Voinnet, Transitivity-dependent and -independent cell-to-cell movement of RNA silencing, The EMBO Journal, vol.22, issue.17, pp.4523-4533, 2003.
DOI : 10.1093/emboj/cdg431

C. Ciaudo, A. Bourdet, M. Cohen-tannoudji, H. Dietz, and C. Rougeulle, Nuclear mRNA Degradation Pathway(s) Are Implicated in Xist Regulation and X Chromosome Inactivation, PLoS Genetics, vol.19, issue.6, 2006.
DOI : 10.1371/journal.pgen.0020094.sg001