D. Schmucker, J. C. Clemens, H. Shu, C. A. Worby, J. Xiao et al., Drosophila Dscam Is an Axon Guidance Receptor Exhibiting Extraordinary Molecular Diversity, Cell, vol.101, issue.6, pp.671-684, 2000.
DOI : 10.1016/S0092-8674(00)80878-8

Z. Wang and C. B. Burge, Splicing regulation: From a parts list of regulatory elements to an integrated splicing code, RNA, vol.14, issue.5, pp.802-813, 2008.
DOI : 10.1261/rna.876308

G. S. Wang and T. A. Cooper, Splicing in disease: disruption of the splicing code and the decoding machinery, Nature Reviews Genetics, vol.16, issue.10, pp.749-761, 2007.
DOI : 10.1038/nrg2164

A. Ahmadian, M. Ehn, and S. Hober, Pyrosequencing: History, biochemistry and future, Clinica Chimica Acta, vol.363, issue.1-2, pp.83-94, 2006.
DOI : 10.1016/j.cccn.2005.04.038

J. Tost and I. G. Gut, Analysis of Gene-Specific DNA Methylation Patterns by Pyrosequencing^?? Technology, Methods Mol. Biol, vol.373, pp.89-102, 2007.
DOI : 10.1385/1-59745-377-3:89

R. J. Shaw, T. Liloglou, S. N. Rogers, J. S. Brown, E. D. Vaughan et al., Promoter methylation of P16, RAR??, E-cadherin, cyclin A1 and cytoglobin in oral cancer: quantitative evaluation using pyrosequencing, British Journal of Cancer, vol.10, issue.4, pp.561-568, 2006.
DOI : 10.1016/S1368-8375(02)00064-7

A. Bhathena, T. Mueller, D. R. Grimm, K. Idler, A. Tsurutani et al., Frequency of the Frame-Shifting CYP2D7 138delT Polymorphism in a Large, Ethnically Diverse Sample Population, Drug Metabolism and Disposition, vol.35, issue.8, pp.1251-1253, 2007.
DOI : 10.1124/dmd.107.014993

A. Alderborn, A. Kristofferson, and U. Hammerling, Determination of Single-Nucleotide Polymorphisms by Real-time Pyrophosphate DNA Sequencing, Genome Research, vol.10, issue.8, pp.1249-1258, 2000.
DOI : 10.1101/gr.10.8.1249

A. Sun, J. Ge, W. Siffert, and U. H. Frey, Quantification of allele-specific G-protein ??3 subunit mRNA transcripts in different human cells and tissues by Pyrosequencing, European Journal of Human Genetics, vol.13, issue.3, pp.361-369, 2005.
DOI : 10.1038/sj.ejhg.5201334

L. Bentley, K. Nakabayashi, D. Monk, C. Beechey, J. Peters et al., The imprinted region on human chromosome 7q32 extends to the carboxypeptidase A gene cluster: an imprinted candidate for Silver-Russell syndrome, Journal of Medical Genetics, vol.40, issue.4, pp.249-256, 2003.
DOI : 10.1136/jmg.40.4.249

X. Zhang, H. Wu, Z. Chen, G. Zhou, T. Kajiyama et al., Dye-Free Gene Expression Detection by Sequence-Tagged Reverse-Transcription Polymerase Chain Reaction Coupled with Pyrosequencing, Analytical Chemistry, vol.81, issue.1, pp.273-281, 2009.
DOI : 10.1021/ac801964a

U. H. Frey, H. Nuckel, D. Dobrev, I. Manthey, I. E. Sandalcioglu et al., Quantification of G Protein G??s Subunit Splice Variants in Different Human Tissues and Cells Using Pyrosequencing, Gene Expression, vol.12, issue.2, pp.69-81, 2005.
DOI : 10.3727/000000005783992124

K. Szafranski, S. Schindler, S. Taudien, M. Hiller, K. Huse et al., Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns, Genome Biology, vol.8, issue.8, p.154, 2007.
DOI : 10.1186/gb-2007-8-8-r154

P. Duriez, M. Lesimple, M. R. Allo, and S. Hardy, Alternative splicing of Xenopus alphafast-tropomyosin pre-mRNA during development: identification of determining sequences, DNA Cell Biol, vol.19, pp.365-376, 2000.

S. Hamon, L. Sommer, C. Mereau, A. Allo, M. R. Hardy et al., ??-Tropomyosin Pre-mRNA, Journal of Biological Chemistry, vol.279, issue.21, pp.22166-22175, 2004.
DOI : 10.1074/jbc.M313809200

T. H. Ho, D. Bundman, D. L. Armstrong, and T. A. Cooper, Transgenic mice expressing CUG-BP1 reproduce splicing mis-regulation observed in myotonic dystrophy, Human Molecular Genetics, vol.14, issue.11, pp.1539-1547, 2005.
DOI : 10.1093/hmg/ddi162

S. Hardy, M. Y. Fiszman, H. B. Osborne, and P. Thiebaud, Characterization of muscle and non muscle Xenopus laevis tropomyosin mRNAs transcribed from the same gene. Developmental and tissue-specific expression, European Journal of Biochemistry, vol.1, issue.2, pp.431-440, 1991.
DOI : 10.1016/0168-9525(86)90286-6

L. Sommer, C. Lesimple, M. Mereau, A. Menoret, S. Allo et al., PTB Regulates the Processing of a 3'-Terminal Exon by Repressing both Splicing and Polyadenylation, Molecular and Cellular Biology, vol.25, issue.21, pp.9595-9607, 2005.
DOI : 10.1128/MCB.25.21.9595-9607.2005

E. J. Wagner, M. L. Curtis, N. D. Robson, A. P. Baraniak, P. S. Eis et al., Quantification of alternatively spliced FGFR2 RNAs using the RNA invasive cleavage assay, RNA, vol.9, issue.12, pp.1552-1561, 2003.
DOI : 10.1261/rna.5840803

S. A. Bustin, Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays, Journal of Molecular Endocrinology, vol.25, issue.2, pp.169-193, 2000.
DOI : 10.1677/jme.0.0250169

S. Kafert, J. Krauter, A. Ganser, and M. Eder, Differential Quantitation of Alternatively Spliced Messenger RNAs Using Isoform-Specific Real-Time RT-PCR, Analytical Biochemistry, vol.269, issue.1, pp.210-213, 1999.
DOI : 10.1006/abio.1999.4016

R. Klinck, A. Bramard, L. Inkel, G. Dufresne-martin, J. Gervais-bird et al., Multiple Alternative Splicing Markers for Ovarian Cancer, Cancer Research, vol.68, issue.3, pp.657-663, 2008.
DOI : 10.1158/0008-5472.CAN-07-2580

J. M. Johnson, J. Castle, P. Garrett-engele, Z. Kan, P. M. Loerch et al., Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays, Science, vol.302, issue.5653, pp.2141-2144, 2003.
DOI : 10.1126/science.1090100

Q. Pan, O. Shai, C. Misquitta, W. Zhang, A. L. Saltzman et al., Revealing Global Regulatory Features of Mammalian Alternative Splicing Using a Quantitative Microarray Platform, Molecular Cell, vol.16, issue.6, pp.929-941, 2004.
DOI : 10.1016/j.molcel.2004.12.004

C. W. Sugnet, K. Srinivasan, T. A. Clark, G. O-'brien, M. S. Cline et al., Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays, PLoS Computational Biology, vol.4, issue.1, p.4, 2006.
DOI : 10.1371/journal.pcbi.0020004.st004

M. Blanchette, R. E. Green, S. E. Brenner, and D. C. Rio, Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila, Genes & Development, vol.19, issue.11, pp.1306-1314, 2005.
DOI : 10.1101/gad.1314205

T. A. Clark, C. W. Sugnet, M. Ares, and . Jr, Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays, Science, vol.296, issue.5569, pp.907-910, 2002.
DOI : 10.1126/science.1069415

G. W. Yeo, X. Xu, T. Y. Liang, A. R. Muotri, C. T. Carson et al., Alternative splicing events identified in human embryonic stem cells and neural progenitors, PLoS Comput. Biol, vol.3, pp.1951-1967, 2007.

C. Ben-dov, B. Hartmann, J. Lundgren, and J. Valcarcel, Genome-wide Analysis of Alternative Pre-mRNA Splicing, Journal of Biological Chemistry, vol.283, issue.3, pp.1229-1233, 2008.
DOI : 10.1074/jbc.R700033200