Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer, Nucleic Acids Research, vol.31, issue.14, pp.4275-84, 2003. ,
DOI : 10.1093/nar/gkg467
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism, Genes Dev, vol.21, pp.1353-66, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00167517
DNA Aptamers Selected Against the HIV-1trans-Activation-responsive RNA Element Form RNA-DNA Kissing Complexes, Journal of Biological Chemistry, vol.274, issue.18, pp.12730-12737, 1999. ,
DOI : 10.1074/jbc.274.18.12730
Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome., Proceedings of the National Academy of Sciences, vol.91, issue.18, pp.8705-8714, 1994. ,
DOI : 10.1073/pnas.91.18.8705
The structure of an RNA ???kissing??? hairpin complex of the HIV TAR hairpin loop and its complement, Journal of Molecular Biology, vol.269, issue.1, pp.52-66, 1997. ,
DOI : 10.1006/jmbi.1997.1021
Identification of functional similarities between proteins using directed evolution, Proceedings of the National Academy of Sciences, vol.100, issue.23, pp.13202-13208, 2003. ,
DOI : 10.1073/pnas.2134365100
Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar, Nucleic Acids Research, vol.26, issue.20, pp.4688-95, 1998. ,
DOI : 10.1093/nar/26.20.4688
-ACTIVATION RESPONSIVE (TAR) RNA OF THE HUMAN IMMUNODEFICIENCY VIRUS-1, Nucleosides, Nucleotides and Nucleic Acids, vol.26, issue.4-7, pp.441-450, 2001. ,
DOI : 10.1081/NCN-100002318
URL : https://hal.archives-ouvertes.fr/hal-01265411
Determination of refractive index increment ratios for protein???nucleic acid complexes by surface plasmon resonance, Analytical Biochemistry, vol.368, issue.2, pp.148-55, 2007. ,
DOI : 10.1016/j.ab.2007.06.016
URL : https://hal.archives-ouvertes.fr/inserm-00173539
Is a Closing "GA Pair" a Rule for Stable Loop-Loop RNA Complexes?, Journal of Biological Chemistry, vol.275, issue.28, pp.21287-94, 2000. ,
DOI : 10.1074/jbc.M002694200
In vitro selection identifies key determinants for loop???loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1, RNA, vol.5, issue.12, pp.1605-1619, 1999. ,
DOI : 10.1017/S1355838299991318
The structure of ColE1 rop in solution, Journal of Biomolecular NMR, vol.169, issue.1, pp.71-82, 1991. ,
DOI : 10.1007/BF01874570
Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom protein, Cell, vol.60, issue.2, pp.199-209, 1990. ,
DOI : 10.1016/0092-8674(90)90736-X
Complexes formed by complementary RNA stem-loops, Journal of Molecular Biology, vol.220, issue.4, pp.831-873, 1991. ,
DOI : 10.1016/0022-2836(91)90356-B
Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site, Nature Structural Biology, vol.8, issue.12, pp.1064-1072, 2001. ,
DOI : 10.1038/nsb727
Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides, Nucleic Acids Research, vol.34, issue.2, pp.472-84, 1998. ,
DOI : 10.1093/nar/gkj442
Determinants of RNA Hairpin Loop-Loop Complex Stability, Journal of Molecular Biology, vol.248, issue.5, pp.968-84, 1995. ,
DOI : 10.1006/jmbi.1995.0275
Novel crystal form of the ColE1 Rom protein, Acta Crystallographica Section D Biological Crystallography, vol.62, issue.6, pp.619-646, 2006. ,
DOI : 10.1107/S0907444906012388
Interpreting Kinetic Rate Constants from Optical Biosensor Data Recorded on a Decaying Surface, Analytical Biochemistry, vol.261, issue.2, pp.203-213, 1998. ,
DOI : 10.1006/abio.1998.2744
A retroviral RNA kissing complex containing only two G{middle dot}C base pairs, Proceedings of the National Academy of Sciences, vol.97, issue.17, pp.9396-401, 2000. ,
DOI : 10.1073/pnas.170283697
The role of RNA structure in the interaction of U1A protein with U1 hairpin II RNA, RNA, vol.12, issue.7, pp.1168-78, 2006. ,
DOI : 10.1261/rna.75206
The solution structure of an RNA loop???loop complex: the ColE1 inverted loop sequence, Structure, vol.6, issue.8, pp.993-1005, 1998. ,
DOI : 10.1016/S0969-2126(98)00101-4
Unusual mechanical stability of a minimal RNA kissing complex, Proceedings of the National Academy of Sciences, vol.103, issue.43, 2006. ,
DOI : 10.1073/pnas.0607202103
[13] Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors, Methods Enzymol, vol.295, pp.268-94, 1998. ,
DOI : 10.1016/S0076-6879(98)95044-3
Improving biosensor analysis, Journal of Molecular Recognition, vol.273, issue.5, pp.279-84, 1999. ,
DOI : 10.1002/(SICI)1099-1352(199909/10)12:5<279::AID-JMR473>3.0.CO;2-3
A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA., Proceedings of the National Academy of Sciences, vol.93, issue.11, pp.5572-5577, 1996. ,
DOI : 10.1073/pnas.93.11.5572
Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA, J Mol Biol, vol.270, pp.36-49, 1997. ,
Dissecting RNA-protein interactions: RNA-RNA recognition by Rop Survey of the year 2005 commercial optical biosensor literature, Cell Rich RL, Myszka DG. J Mol Recognit, vol.80, issue.19, pp.41-50, 1995. ,
Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence, Nucleic Acids Research, vol.29, issue.11, pp.2401-2409, 2001. ,
DOI : 10.1093/nar/29.11.2401
Integrated fluid handling system for biomolecular interaction analysis, Analytical Chemistry, vol.63, issue.20, pp.2338-2383, 1991. ,
DOI : 10.1021/ac00020a025
The Hepatitis C Virus RNA 3'-Untranslated Region Strongly Enhances Translation Directed by the Internal Ribosome Entry Site, Journal of Virology, vol.80, issue.23, pp.11579-88, 2006. ,
DOI : 10.1128/JVI.00675-06
Determination of the refractive index increment (dn/dc) of molecule and macromolecule solutions by surface plasmon resonance Analysing structurefunction relationships with biosensors, Anal Biochem Cell Mol Life Sci, vol.333, issue.58, pp.273-279, 2001. ,