A. Templeton, T. Maxwell, D. Posada, J. Stengard, E. Boerwinkle et al., Tree Scanning: A Method for Using Haplotype Trees in Phenotype/Genotype Association Studies, Genetics, vol.169, issue.1, pp.441-453, 2005.
DOI : 10.1534/genetics.104.030080

H. Seltman, K. Roeder, and B. Devlin, Evolutionary-based association analysis using haplotype data, Genetic Epidemiology, vol.99, issue.1, pp.48-58, 2003.
DOI : 10.1002/gepi.10246

C. Durrant, K. Zondervan, L. Cardon, S. Hunt, P. Deloukas et al., Linkage Disequilibrium Mapping via Cladistic Analysis of Single-Nucleotide Polymorphism Haplotypes, The American Journal of Human Genetics, vol.75, issue.1, pp.35-43, 2004.
DOI : 10.1086/422174

C. Bardel, V. Danjean, J. Hugot, P. Darlu, and E. Génin, On the use of haplotype phylogeny to detect disease susceptibility loci, BMC Genetics, vol.6, issue.1, p.24, 2005.
DOI : 10.1186/1471-2156-6-24
URL : https://hal.archives-ouvertes.fr/inserm-00090521

O. Connell and J. , Zero-recombinant haplotyping: Applications to fine mapping using SNPs, Genetic Epidemiology, vol.117, issue.S1, pp.64-70, 2000.
DOI : 10.1002/1098-2272(2000)19:1+<::AID-GEPI10>3.0.CO;2-G

P. Croiseau, E. Génin, and H. Cordell, Dealing with missing data in family-based association studies: a multiple imputation approach, Hum Hered, vol.63, pp.229-238, 2007.
URL : https://hal.archives-ouvertes.fr/inserm-00143682

C. Bardel, V. Danjean, and E. Génin, ALTree: association detection and localization of susceptibility sites using haplotype phylogenetic trees, Bioinformatics, vol.22, issue.11, pp.1402-1403, 2006.
DOI : 10.1093/bioinformatics/btl131

D. Swofford and . Paup-*, Phylogenetic Analysis Using Parsimony Sinauer Associates 9. Durrant C, Morris A: Linkage disequilibrium mapping via cladistic analysis of phase-unknown genotypes in the Genetic Analysis Workshop 14 simulated data, BMC Genet, vol.6, p.100, 2002.