Surprising similarities in structure comparison, Current Opinion in Structural Biology, vol.6, issue.3, pp.377-385, 1996. ,
DOI : 10.1016/S0959-440X(96)80058-3
Hierarchical protein structure superposition using both secondary structure and atomic representations, Proc Int Conf Intell Syst Mol Biol, vol.5, pp.284-293, 1997. ,
: a new method for protein structure comparisons and similarity searches, Journal of Applied Crystallography, vol.33, issue.1, pp.176-183, 2000. ,
DOI : 10.1107/S0021889899012339
Protein structure alignment using environmental profiles, Protein Engineering Design and Selection, vol.13, issue.8, pp.535-543, 2000. ,
DOI : 10.1093/protein/13.8.535
Protein Structure Comparison by Alignment of Distance Matrices, Journal of Molecular Biology, vol.233, issue.1, pp.123-138, 1993. ,
DOI : 10.1006/jmbi.1993.1489
Using known substructures in protein model building and crystallography, Embo J, vol.5, pp.819-822, 1986. ,
A 3D building blocks approach to analyzing and predicting structure of proteins, Proteins: Structure, Function, and Genetics, vol.5, issue.4, pp.355-373, 1989. ,
DOI : 10.1002/prot.340050410
Accurate modeling of protein conformation by automatic segment matching, Journal of Molecular Biology, vol.226, issue.2, pp.507-533, 1992. ,
DOI : 10.1016/0022-2836(92)90964-L
The importance of short structural motifs in protein structure analysis, Journal of Computer-Aided Molecular Design, vol.6, issue.4, pp.457-472, 1993. ,
DOI : 10.1007/BF02337561
Prediction of local structure in proteins using a library of sequence-structure motifs, Journal of Molecular Biology, vol.281, issue.3, pp.565-577, 1998. ,
DOI : 10.1006/jmbi.1998.1943
The complexity and accuracy of discrete state models of protein structure, Journal of Molecular Biology, vol.249, issue.2, pp.493-507, 1995. ,
DOI : 10.1006/jmbi.1995.0311
Small Libraries of Protein Fragments Model Native Protein Structures Accurately, Journal of Molecular Biology, vol.323, issue.2, pp.297-307, 2002. ,
DOI : 10.1016/S0022-2836(02)00942-7
Use of a structural alphabet for analysis of short loops connecting repetitive structures Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks New assessment of a structural alphabet A general method applicable to the search for similarities in the amino acid sequence of two proteins, BMC Bioinformatics Proteins In Silico Biology Needleman, S.B. and Wunsch, C.D. J Mol Biol, vol.5, issue.48, pp.58-72, 1970. ,
Identification of common molecular subsequences, Journal of Molecular Biology, vol.147, issue.1, pp.195-197, 1981. ,
DOI : 10.1016/0022-2836(81)90087-5
SA-Search: a web tool for protein structure mining based on a Structural Alphabet, Nucleic Acids Research, vol.32, issue.Web Server, pp.545-548, 2004. ,
DOI : 10.1093/nar/gkh467
PALI--a database of Phylogeny and ALIgnment of homologous protein structures, Nucleic Acids Research, vol.29, issue.1, pp.61-65, 2001. ,
DOI : 10.1093/nar/29.1.61
Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database, Nucleic Acids Research, vol.31, issue.1, pp.486-488, 2003. ,
DOI : 10.1093/nar/gkg063
Local structural motifs of protein backbones are classified by self-organizing neural networks, "Protein Engineering, Design and Selection", vol.9, issue.10, pp.833-842, 1996. ,
DOI : 10.1093/protein/9.10.833
Extension of a local backbone description using a structural alphabet: A new approach to the sequence-structure relationship, Protein Science, vol.40, issue.(1/2), pp.2871-2886, 2002. ,
DOI : 10.1110/ps.0220502
URL : https://hal.archives-ouvertes.fr/inserm-00143374
A structural alphabet for local protein structures: improved prediction methods A structural model of a seven-transmembrane helix receptor: the Duffy antigen/receptor for chemokine (DARC), Proteins Biochim Biophys Acta, vol.59, issue.1724, pp.810-827, 2005. ,
Structural Features can be Unconserved in Proteins with Similar Folds, Journal of Molecular Biology, vol.244, issue.3, pp.332-350, 1994. ,
DOI : 10.1006/jmbi.1994.1733
Rapid comparison of protein structures, Acta Crystallographica Section A, vol.38, issue.6, pp.871-873, 1982. ,
DOI : 10.1107/S0567739482001806
SCOP: a Structural Classification of Proteins database, Nucleic Acids Research, vol.28, issue.1, pp.257-259, 2000. ,
DOI : 10.1093/nar/28.1.257
The ASTRAL compendium for protein structure and sequence analysis, Nucleic Acids Research, vol.28, issue.1, pp.254-256, 2000. ,
DOI : 10.1093/nar/28.1.254