Skip to Main content Skip to Navigation
Journal articles

Protein Peeling 2: a web server to convert protein structures into series of protein units.

Abstract : Protein Peeling 2 (PP2) is a web server for the automatic identification of protein units (PUs) given the 3D coordinates of a protein. PUs are an intermediate level of protein structure description between protein domains and secondary structures. It is a new tool to better understand and analyze the organization of protein structures. PP2 uses only the matrices of protein contact probabilities and cuts the protein structures optimally using Matthews' coefficient correlation. An index assesses the compactness quality of each PU. Results are given both textually and graphically using JMol and PyMol softwares. The server can be accessed from http://www.ebgm.jussieu.fr/~gelly/index.html.
Complete list of metadatas

Cited literature [29 references]  Display  Hide  Download

https://www.hal.inserm.fr/inserm-00133731
Contributor : Alexandre G. de Brevern <>
Submitted on : Monday, July 23, 2007 - 4:17:44 PM
Last modification on : Tuesday, November 3, 2020 - 11:18:02 AM
Long-term archiving on: : Tuesday, April 6, 2010 - 9:51:17 PM

Identifiers

Collections

Citation

Jean-Christophe Gelly, Catherine Etchebest, Serge Hazout, Alexandre de Brevern. Protein Peeling 2: a web server to convert protein structures into series of protein units.. Nucleic Acids Research, Oxford University Press, 2006, 34 (Web Server issue), pp.W75-8. ⟨10.1093/nar/gkl292⟩. ⟨inserm-00133731⟩

Share

Metrics

Record views

748

Files downloads

915