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GOToolBox: functional analysis of gene datasets based on Gene Ontology.

Abstract : We have developed methods and tools based on the Gene Ontology (GO) resource allowing the identification of statistically over- or under-represented terms in a gene dataset; the clustering of functionally related genes within a set; and the retrieval of genes sharing annotations with a query gene. GO annotations can also be constrained to a slim hierarchy or a given level of the ontology. The source codes are available upon request, and distributed under the GPL license.
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Submitted on : Friday, September 15, 2006 - 2:48:37 PM
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David Martin, Christine Brun, Elisabeth Remy, Pierre Mouren, Denis Thieffry, et al.. GOToolBox: functional analysis of gene datasets based on Gene Ontology.. Genome Biology, BioMed Central, 2004, 5, pp.R101. ⟨10.1186/gb-2004-5-12-r101⟩. ⟨inserm-00095249⟩



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