G. Edwalds-gilbert, K. Veraldi, and C. Milcarek, Alternative poly(A) site selection in complex transcription units: means to an end?, Nucleic Acids Research, vol.25, issue.13, pp.2547-2561, 1997.
DOI : 10.1093/nar/25.13.2547

E. Beaudoing, S. Freier, J. Wyatt, J. Claverie, and D. Gautheret, Patterns of Variant Polyadenylation Signal Usage in Human Genes, Genome Research, vol.10, issue.7, pp.1001-1010, 2000.
DOI : 10.1101/gr.10.7.1001

H. Zhang, J. Hu, M. Recce, and B. Tian, PolyA_DB: a database for mammalian mRNA polyadenylation, Nucleic Acids Research, vol.33, issue.Database issue, pp.116-120, 2005.
DOI : 10.1093/nar/gki055
URL : http://doi.org/10.1093/nar/gki055

B. Tian, J. Hu, H. Zhang, and C. Lutz, A large-scale analysis of mRNA polyadenylation of human and mouse genes, Nucleic Acids Research, vol.33, issue.1, pp.201-212, 2005.
DOI : 10.1093/nar/gki158

J. Yan and T. Marr, Computational analysis of 3'-ends of ESTs shows four classes of alternative polyadenylation in human, mouse, and rat, Genome Research, vol.15, issue.3, pp.369-375, 2005.
DOI : 10.1101/gr.3109605

E. Beaudoing and D. Gautheret, Identification of Alternate Polyadenylation Sites and Analysis of their Tissue Distribution Using EST Data, Genome Research, vol.11, issue.9, pp.1520-1526, 2001.
DOI : 10.1101/gr.190501

J. Hu, C. Lutz, J. Wilusz, and B. Tian, Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation, RNA, vol.11, issue.10, pp.1485-1493, 2005.
DOI : 10.1261/rna.2107305

H. Zhang, J. Lee, and B. Tian, Biased alternative polyadenylation in human tissues, Genome Biology, vol.6, issue.12, p.100, 2005.
DOI : 10.1186/gb-2005-6-12-r100

J. Brockman, P. Singh, D. Liu, S. Quinlan, J. Salisbury et al., PACdb: PolyA Cleavage Site and 3'-UTR Database, Bioinformatics, vol.21, issue.18, pp.3691-3693, 2005.
DOI : 10.1093/bioinformatics/bti589
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/21/18/3691

B. Modrek and C. Lee, Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss, Nature Genetics, vol.34, issue.2, pp.177-180, 2003.
DOI : 10.1038/ng1159

Z. Kan, P. Garrett-engele, J. Johnson, and J. Castle, Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles, Nucleic Acids Research, vol.33, issue.17, pp.5659-5666, 2005.
DOI : 10.1093/nar/gki834
URL : http://doi.org/10.1093/nar/gki834

J. Kelso, J. Visagie, G. Theiler, A. Christoffels, S. Bardien et al., eVOC: A Controlled Vocabulary for Unifying Gene Expression Data, Genome Research, vol.13, issue.6, pp.1222-1230, 2003.
DOI : 10.1101/gr.985203

F. Chen, C. Macdonald, and J. Wilusz, Cleavage site determinants min the mammalian polydenylation signal, Nucleic Acids Research, vol.23, issue.14, pp.2614-2620, 1995.
DOI : 10.1093/nar/23.14.2614

J. Zhao, L. Hyman, and C. Moore, Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis, Microbiol Mol Biol Rev, vol.63, pp.405-445, 1999.

M. Legendre and D. Gautheret, Sequence determinants in human polyadenylation site selection, BMC Genomics, vol.4, issue.1, p.7, 2003.
DOI : 10.1186/1471-2164-4-7
URL : https://hal.archives-ouvertes.fr/inserm-00115748

A. Siepel, G. Bejerano, J. Pedersen, A. Hinrichs, M. Hou et al., Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes, Genome Research, vol.15, issue.8, pp.1034-1050, 2005.
DOI : 10.1101/gr.3715005

R. Tanguay and D. Gallie, Translational efficiency is regulated by the length of the 3' untranslated region., Molecular and Cellular Biology, vol.16, issue.1, pp.146-156, 1996.
DOI : 10.1128/MCB.16.1.146

T. Imanishi, T. Itoh, Y. Suzuki, O. Donovan, C. Fukuchi et al., Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones, S: Integrative annotation of 21,037 human genes validated by full-length cDNA clones, p.162, 2004.
DOI : 10.1371/journal.pbio.0020162.sd004
URL : https://hal.archives-ouvertes.fr/inria-00099938

P. Carninci, K. Waki, T. Shiraki, H. Konno, K. Shibata et al., Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia, Y: Targeting a complex transcriptome: the construction of the mouse fulllength cDNA encyclopedia, pp.1273-1289, 2003.
DOI : 10.1101/gr.1119703

S. Mcginnis and T. Madden, BLAST: at the core of a powerful and diverse set of sequence analysis tools, Nucleic Acids Research, vol.32, issue.Web Server, pp.20-25, 2004.
DOI : 10.1093/nar/gkh435

E. Birney, T. Andrews, P. Bevan, M. Caccamo, Y. Chen et al., An Overview of Ensembl, M: An overview of Ensembl, pp.925-928, 2004.
DOI : 10.1101/gr.1860604

A. Kasprzyk, D. Keefe, D. Smedley, D. London, W. Spooner et al., EnsMart: A Generic System for Fast and Flexible Access to Biological Data, Genome Research, vol.14, issue.1, pp.160-169, 2004.
DOI : 10.1101/gr.1645104