Opinion: Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs, Nature Reviews Genetics, vol.4, issue.5, pp.396-400, 2004. ,
DOI : 10.1016/j.cub.2003.11.017
Principles of MicroRNA???Target Recognition, PLoS Biology, vol.5, issue.3, 2005. ,
DOI : 10.1371/journal.pbio.0030085.g007
Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets, Cell, vol.120, issue.1, pp.15-20, 2005. ,
DOI : 10.1016/j.cell.2004.12.035
Human MicroRNA Targets, PLoS Biology, vol.31, issue.11, 2004. ,
DOI : 10.1371/journal.pbio.0020363.st013
URL : http://doi.org/10.1371/journal.pbio.0020363
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs, Nature, vol.22, issue.7027, pp.769-773, 2005. ,
DOI : 10.1016/S0092-8674(00)00015-5
Role of MicroRNAs in Plant and Animal Development, Science, vol.301, issue.5631, pp.336-338, 2003. ,
DOI : 10.1126/science.1085242
Regulation by let-7 and lin-4 miRNAs Results in Target mRNA Degradation, Cell, vol.122, issue.4, pp.553-563, 2005. ,
DOI : 10.1016/j.cell.2005.07.031
The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution, Science, vol.310, issue.5755, pp.1817-1821, 2005. ,
DOI : 10.1126/science.1121158
Patterns of Variant Polyadenylation Signal Usage in Human Genes, Genome Research, vol.10, issue.7, pp.1001-1010, 2000. ,
DOI : 10.1101/gr.10.7.1001
Alternate polyadenylation in human mRNAs: A large-scale analysis by EST clustering, Genome Res, vol.8, pp.524-530, 1998. ,
A large-scale analysis of mRNA polyadenylation of human and mouse genes, Nucleic Acids Research, vol.33, issue.1, pp.201-212, 2005. ,
DOI : 10.1093/nar/gki158
An Overview of Ensembl, Genome Research, vol.14, issue.5, pp.925-928, 2004. ,
DOI : 10.1101/gr.1860604
Systematic discovery of regulatory motifs in human promoters and 3??? UTRs by comparison of several mammals, Nature, vol.55, issue.7031, pp.338-345, 2005. ,
DOI : 10.1016/S0968-0004(00)89102-1
Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression, Nucleic Acids Research, vol.21, issue.10, pp.2315-2322, 1993. ,
DOI : 10.1093/nar/21.10.2315
Identification of Tissue-Specific MicroRNAs from Mouse, Current Biology, vol.12, issue.9, pp.735-739, 2002. ,
DOI : 10.1016/S0960-9822(02)00809-6
Expression profiling of mammalian microRNAs uncovers a subset of brainexpressed microRNAs with possible roles in murine and human neuronal differentiation, Genome Biology, vol.5, issue.3, p.13, 2004. ,
DOI : 10.1186/gb-2004-5-3-r13
A PUF family portrait: 3???UTR regulation as a way of life, Trends in Genetics, vol.18, issue.3, pp.150-157, 2002. ,
DOI : 10.1016/S0168-9525(01)02616-6
BLAST: at the core of a powerful and diverse set of sequence analysis tools, Nucleic Acids Research, vol.32, issue.Web Server, pp.20-25, 2004. ,
DOI : 10.1093/nar/gkh435
From The Cover: Fast and reliable prediction of noncoding RNAs, Proceedings of the National Academy of Sciences, vol.12, issue.6, pp.2454-2459, 2005. ,
DOI : 10.1101/gr.229102. Article published online before print in May 2002
The microRNA Registry, Nucleic Acids Research, vol.32, issue.90001, pp.109-111, 2004. ,
DOI : 10.1093/nar/gkh023
URL : http://doi.org/10.1093/nar/gkh023
Identification of hundreds of conserved and nonconserved human microRNAs, Nature Genetics, vol.37, issue.7, pp.766-770, 2005. ,
DOI : 10.1101/gad.862301
Phylogenetic Shadowing and Computational Identification of Human microRNA Genes, Cell, vol.120, issue.1, pp.21-24, 2005. ,
DOI : 10.1016/j.cell.2004.12.031
Involvement of MicroRNA in AU-Rich Element-Mediated mRNA Instability, Cell, vol.120, issue.5, pp.623-657, 2005. ,
DOI : 10.1016/j.cell.2004.12.038
Computational identification of Drosophila microRNA genes, Genome Biology, vol.4, issue.7, p.42, 2003. ,
DOI : 10.1186/gb-2003-4-7-r42
Vertebrate MicroRNA Genes, Science, vol.299, issue.5612, p.1540, 2003. ,
DOI : 10.1126/science.1080372
Biased alternative polyadenylation in human tissues, Genome Biol, vol.12, p.100, 2005. ,
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones, PLoS Biology, vol.7, issue.6, 2004. ,
DOI : 10.1371/journal.pbio.0020162.sd004
URL : https://hal.archives-ouvertes.fr/inria-00099938
Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia, Genome Research, vol.13, issue.6, pp.1273-1289, 2003. ,
DOI : 10.1101/gr.1119703
Fast and sensitive multiple alignment of large genomic sequences, BMC Bioinformatics, vol.4, issue.1, p.66, 2003. ,
DOI : 10.1186/1471-2105-4-66
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ, Nucleic Acids Research, vol.32, issue.Web Server, pp.33-36, 2004. ,
DOI : 10.1093/nar/gkh373
URL : http://doi.org/10.1093/nar/gkh373
Integration of text- and data-mining using ontologies successfully selects disease gene candidates, Nucleic Acids Research, vol.33, issue.5, pp.1544-1552, 2005. ,
DOI : 10.1093/nar/gki296
URL : http://doi.org/10.1093/nar/gki296
Vienna RNA secondary structure server, Nucleic Acids Research, vol.31, issue.13, pp.3429-3431, 2003. ,
DOI : 10.1093/nar/gkg599
URL : http://doi.org/10.1093/nar/gkg599
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994. ,
DOI : 10.1093/nar/22.22.4673
A comprehensive comparison of comparative RNA structure prediction approaches, BMC Bioinformatics, vol.5, issue.1, p.140, 2004. ,
DOI : 10.1186/1471-2105-5-140