Tissue biology perspective on macrophages, Nature Immunology, vol.195, issue.1, pp.9-17, 2016. ,
DOI : 10.1084/jem.20001858
Macrophage biology in development, homeostasis and disease, Nature, vol.6, issue.7446, pp.445-455, 2013. ,
DOI : 10.1038/nprot.2011.376
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725458
Macrophage plasticity and polarization: in vivo veritas, Journal of Clinical Investigation, vol.122, issue.3, pp.787-795, 2012. ,
DOI : 10.1172/JCI59643DS1
URL : http://www.jci.org/articles/view/59643/files/pdf
Macrophage Polarization, Annual Review of Physiology, vol.79, issue.1, pp.541-566, 2017. ,
DOI : 10.1146/annurev-physiol-022516-034339
Interleukin 4 potently enhances murine macrophage mannose receptor activity: a marker of alternative immunologic macrophage activation, Journal of Experimental Medicine, vol.176, issue.1, pp.287-292, 1992. ,
DOI : 10.1084/jem.176.1.287
The M1 and M2 paradigm of macrophage activation: time for reassessment. F1000prime Rep, p.13, 2014. ,
Differential regulation of chemokine production by Fc?? receptor engagement in human monocytes: association of CCL1 with a distinct form of M2 monocyte activation (M2b, Type 2), Journal of Leukocyte Biology, vol.80, issue.2, pp.342-349, 2006. ,
DOI : 10.1189/jlb.1005586
Macrophage polarization in metabolic disorders, Current Opinion in Lipidology, vol.22, issue.5, pp.365-372, 2011. ,
DOI : 10.1097/MOL.0b013e32834a77b4
URL : https://hal.archives-ouvertes.fr/inserm-00618280
Studying the mononuclear phagocyte system in the molecular age, Nature Reviews Immunology, vol.83, issue.11, pp.788-798, 2011. ,
DOI : 10.4049/jimmunol.176.4.2465
Exploring the full spectrum of macrophage activation, Nature Reviews Immunology, vol.117, issue.12, pp.958-969, 2008. ,
DOI : 10.4049/jimmunol.171.7.3550
Protective and pathogenic functions of macrophage subsets, Nature Reviews Immunology, vol.332, issue.11, pp.723-737, 2011. ,
DOI : 10.1126/science.1201475
New insights into the multidimensional concept of macrophage ontogeny, activation and function, Nature Immunology, vol.332, issue.1, pp.34-40, 2015. ,
DOI : 10.1126/science.1198704
Transcriptome-Based Network Analysis Reveals a Spectrum Model of Human Macrophage Activation, Immunity, vol.40, issue.2, pp.274-288, 2014. ,
DOI : 10.1016/j.immuni.2014.01.006
Oxygen in the Cultivation of Stem Cells, Annals of the New York Academy of Sciences, vol.22, issue.1, pp.1-8, 2005. ,
DOI : 10.1038/nbt922
Functional, morphological, and phenotypical differences between rat alveolar and interstitial macrophages., American Journal of Respiratory Cell and Molecular Biology, vol.16, issue.5, pp.582-588, 1997. ,
DOI : 10.1165/ajrcmb.16.5.9160840
Environmental oxygen tension affects phenotype in cultured bone marrow-derived macrophages, AJP: Lung Cellular and Molecular Physiology, vol.286, issue.2, pp.354-362, 2004. ,
DOI : 10.1152/ajplung.00380.2002
URL : http://ajplung.physiology.org/content/ajplung/286/2/L354.full.pdf
Oxygen Tension Modulates Differentiation and Primary Macrophage Functions in the Human Monocytic THP-1 Cell Line, PLoS ONE, vol.20, issue.1, p.54926, 2013. ,
DOI : 10.1371/journal.pone.0054926.t001
The Dynamics of Apoptotic Cell Clearance, Developmental Cell, vol.38, issue.2, pp.147-160, 2016. ,
DOI : 10.1016/j.devcel.2016.06.029
Macrophage Activation and Polarization: Nomenclature and Experimental Guidelines, Immunity, vol.41, issue.1, pp.14-20, 2014. ,
DOI : 10.1016/j.immuni.2014.06.008
URL : http://doi.org/10.1016/j.immuni.2014.07.009
Peptide Storage: Are You Getting the Best Return on Your Investment? Defining Optimal Storage Conditions for Proteomics Samples, Journal of Proteome Research, vol.8, issue.7, pp.3778-3785, 2009. ,
DOI : 10.1021/pr900095u
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment, Journal of Proteome Research, vol.10, issue.4, pp.1794-1805, 2011. ,
DOI : 10.1021/pr101065j
URL : http://doi.org/10.1021/pr101065j
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ, Molecular & Cellular Proteomics, vol.10, issue.9, pp.2513-2526, 2014. ,
DOI : 10.1074/mcp.M111.011015
URL : http://www.mcponline.org/content/13/9/2513.full.pdf
FunRich: An open access standalone functional enrichment and interaction network analysis tool, PROTEOMICS, vol.35, issue.10 Suppl, pp.2597-2601, 2015. ,
DOI : 10.1093/nar/gkm327
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources, Nature Protocols, vol.99, issue.1, pp.44-57, 2009. ,
DOI : 10.6026/97320630002428
Human macrophage polarization in vitro: Maturation and activation methods compared, Immunobiology, vol.219, issue.9, pp.695-703, 2014. ,
DOI : 10.1016/j.imbio.2014.05.002
Expression and regulation of 12/15-lipoxygenases in human primary macrophages, Atherosclerosis, vol.225, issue.1, pp.121-127, 2012. ,
DOI : 10.1016/j.atherosclerosis.2012.07.022
Lipopolysaccharide induces CD38 expression and solubilization in J774 macrophage cells, Molecules and Cells, vol.74, issue.6, pp.573-576, 2012. ,
DOI : 10.1016/j.lfs.2003.08.033
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3887823
Cytokine Signaling in 2002, Cell, vol.109, issue.2, pp.121-131, 2002. ,
DOI : 10.1016/S0092-8674(02)00701-8
Interferons up-regulate STAT1, STAT2, and IRF family transcription factor gene expression in human peripheral blood mononuclear cells and macrophages, J. Immunol. Baltim. Md, vol.159, pp.794-803, 1950. ,
Mechanisms of type-I- and type-II-interferon-mediated signalling, Nature Reviews Immunology, vol.132, issue.5, pp.375-386, 2005. ,
DOI : 10.1001/jama.290.24.3222
Metabolism of glucose, glutamine, long-chain fatty acids and ketone bodies by murine macrophages, Biochemical Journal, vol.239, issue.1, pp.121-125, 1986. ,
DOI : 10.1042/bj2390121
Metabolic reprogramming in macrophages and dendritic cells in innate immunity, Cell Research, vol.131, issue.7, pp.771-784, 2015. ,
DOI : 10.1016/j.cmet.2014.03.014
CD14 Controls the LPS-Induced Endocytosis of Toll-like Receptor 4, Cell, vol.147, issue.4, pp.868-880, 2011. ,
DOI : 10.1016/j.cell.2011.09.051
15-Lipoxygenases regulate the production of chemokines in human lung macrophages, British Journal of Pharmacology, vol.277, issue.Database Issue, pp.4319-4330, 2015. ,
DOI : 10.1074/jbc.M205738200
Complement-dependent Clearance of Apoptotic Cells by Human Macrophages, The Journal of Experimental Medicine, vol.9, issue.12, pp.2313-2320, 1998. ,
DOI : 10.1146/annurev.immunol.15.1.649
Efficient Clearance of Early Apoptotic Cells by Human Macrophages Requires M2c Polarization and MerTK Induction, The Journal of Immunology, vol.189, issue.7, pp.3508-3520, 1950. ,
DOI : 10.4049/jimmunol.1200662
Transcriptional Profiling of the Human Monocyte-to-Macrophage Differentiation and Polarization: New Molecules and Patterns of Gene Expression, The Journal of Immunology, vol.177, issue.10, pp.7303-7311, 1950. ,
DOI : 10.4049/jimmunol.177.10.7303
High-Resolution Transcriptome of Human Macrophages, PLoS ONE, vol.7, issue.9, p.45466, 2012. ,
DOI : 10.1371/journal.pone.0045466.s016
Genetic programs expressed in resting and IL-4 alternatively activated mouse and human macrophages: similarities and differences, Blood, vol.121, issue.9, pp.57-69, 2013. ,
DOI : 10.1182/blood-2012-06-436212
URL : http://www.bloodjournal.org/content/bloodjournal/121/9/e57.full.pdf
Immunometabolism governs dendritic cell and macrophage function, J. Exp. Med, vol.213, pp.15-23, 2016. ,
Hexokinase 2 is a key mediator of aerobic glycolysis and promotes tumor growth in human glioblastoma multiforme, The Journal of Experimental Medicine, vol.124, issue.2, pp.313-326, 2011. ,
DOI : 10.1126/science.1170944
Response to fluorouracil therapy in cancer patients: the role of tumoral dihydropyrimidine dehydrogenase activity., Journal of Clinical Oncology, vol.13, issue.7, pp.1663-1670, 1995. ,
DOI : 10.1200/JCO.1995.13.7.1663
Quantitative variation in la antigen expression plays a central role in immune regulation, Immunology Today, vol.5, issue.4, pp.99-105, 1984. ,
DOI : 10.1016/0167-5699(84)90043-4
TRAUMA-INDUCED SUPPRESSION OF ANTIGEN PRESENTATION AND EXPRESSION OF MAJOR HISTOCOMPATIBILITY CLASS II ANTIGEN COMPLEX IN LEUKOCYTES, Shock, vol.5, issue.2, pp.79-90, 1996. ,
DOI : 10.1097/00024382-199602000-00001
The impact of hypoxia on tumor-associated macrophages, Journal of Clinical Investigation, vol.126, issue.10, pp.3672-3679, 2016. ,
DOI : 10.1172/JCI84427
Tumor Hypoxia Does Not Drive Differentiation of Tumor-Associated Macrophages but Rather Fine-Tunes the M2-like Macrophage Population, Cancer Research, vol.74, issue.1, pp.24-30, 2014. ,
DOI : 10.1158/0008-5472.CAN-13-1196
DC-SIGN+ Macrophages Control the Induction of Transplantation Tolerance, -H., and Ochando, J. (2015) DC-SIGN(+) Macrophages Control the Induction of Transplantation Tolerance, pp.1143-1158 ,
DOI : 10.1016/j.immuni.2015.05.009
Signalling through C-type lectin receptors: shaping immune responses, Nature Reviews Immunology, vol.16, issue.7, pp.465-479, 2009. ,
DOI : 10.1172/JCI200419655
DC-SIGN Induction in Alveolar Macrophages Defines Privileged Target Host Cells for Mycobacteria in Patients with Tuberculosis, PLoS Medicine, vol.32, issue.12, 2005. ,
DOI : 10.1371/journal.pmed.0020381.t003
URL : https://hal.archives-ouvertes.fr/pasteur-00154028
Autoimmune kidney disease and impaired engulfment of apoptotic cells in mice with macrophage peroxisome proliferator-activated receptor gamma or retinoid X receptor alpha deficiency, J. Immunol. Baltim. Md, vol.186, pp.621-631, 1950. ,
Structural and biochemical basis for induced self-propagation of NLRC4, Science, vol.16, issue.5, pp.399-404, 2015. ,
DOI : 10.1016/j.str.2008.03.005
The innate immune system and the clearance of apoptotic cells, Journal of Leukocyte Biology, vol.90, issue.3, pp.447-457, 2011. ,
DOI : 10.1189/jlb.0211095
Resolution of inflammation: a new therapeutic frontier, Nature Reviews Drug Discovery, vol.182, issue.8, pp.551-567, 2016. ,
DOI : 10.4049/jimmunol.0801739
Human CD14 mediates recognition and phagocytosis of apoptotic cells, Nature, vol.392, pp.505-509, 1998. ,
Transglutaminase 2 Is Needed for the Formation of an Efficient Phagocyte Portal in Macrophages Engulfing Apoptotic Cells, The Journal of Immunology, vol.182, issue.4, pp.2084-2092, 1950. ,
DOI : 10.4049/jimmunol.0803444
Cutting Edge: Lipoxins Rapidly Stimulate Nonphlogistic Phagocytosis of Apoptotic Neutrophils by Monocyte-Derived Macrophages, The Journal of Immunology, vol.164, issue.4, pp.1663-1667, 1950. ,
DOI : 10.4049/jimmunol.164.4.1663
ICAM-1 suppresses tumor metastasis by inhibiting macrophage M2 polarization through blockade of efferocytosis, Cell Death and Disease, vol.2, issue.6, p.1780, 2015. ,
DOI : 10.4049/jimmunol.1200625
Enhancement of macrophage phagocytosis upon iC3b deposition on apoptotic cells, FEBS Letters, vol.373, issue.2-3, pp.269-272, 1996. ,
DOI : 10.1016/0014-5793(95)01036-E
Glucocorticoids induce differentiation of a specifically activated, anti-inflammatory subtype of human monocytes, Blood, vol.109, issue.3, pp.1265-1274, 2007. ,
DOI : 10.1182/blood-2006-02-001115
Inhibition of transglutaminase 2 reduces efferocytosis in human macrophages: Role of CD14 and SR-AI receptors, Nutrition, Metabolism and Cardiovascular Diseases, vol.26, issue.10, pp.922-930, 2016. ,
DOI : 10.1016/j.numecd.2016.05.011