S. Ray, J. Bailey, and D. Thomas, Hepatitis C Virus, Fields Virology, 2013.

E. Gould and T. Solomon, Pathogenic flaviviruses, The Lancet, vol.371, issue.9611, pp.500-509, 2008.
DOI : 10.1016/S0140-6736(08)60238-X

S. Weaver and W. Reisen, Present and future arboviral threats, Antiviral Research, vol.85, issue.2, pp.328-373, 2010.
DOI : 10.1016/j.antiviral.2009.10.008

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815176

T. Liang and M. Ghany, Current and Future Therapies for Hepatitis C Virus Infection, New England Journal of Medicine, vol.368, issue.20, pp.1907-1924, 2013.
DOI : 10.1056/NEJMra1213651

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893124

C. Shepard, L. Finelli, and M. Alter, Global epidemiology of hepatitis C virus infection, The Lancet Infectious Diseases, vol.5, issue.9, pp.558-67, 2005.
DOI : 10.1016/S1473-3099(05)70216-4

C. Li, L. Lu, D. Murphy, F. Negro, and H. Okamoto, Origin of hepatitis C virus genotype 3 in Africa as estimated through an evolutionary analysis of the full-length genomes of nine subtypes, including the newly sequenced 3d and 3e, Journal of General Virology, vol.95, issue.Pt_8, pp.1677-88, 2014.
DOI : 10.1099/vir.0.065128-0

P. Simmonds, The Origin of Hepatitis C Virus, Curr Top Microbiol Immunol, vol.369, pp.1-15, 2013.
DOI : 10.1007/978-3-642-27340-7_1

T. Baumert, J. Vergalla, J. Satoi, M. Thomson, M. Lechmann et al., Hepatitis C virus-like particles synthesized in insect cells as a potential vaccine candidate, Gastroenterology, vol.117, issue.6, pp.1397-407, 1999.
DOI : 10.1016/S0016-5085(99)70290-8

S. Jeong, M. Qiao, M. Nascimbeni, Z. Hu, B. Rehermann et al., Immunization with Hepatitis C Virus-Like Particles Induces Humoral and Cellular Immune Responses in Nonhuman Primates, Journal of Virology, vol.78, issue.13, pp.6995-7003, 2004.
DOI : 10.1128/JVI.78.13.6995-7003.2004

M. Flint, E. Quinn, and S. Levy, IN SEARCH OF HEPATITIS C VIRUS RECEPTOR(S), Clinics in Liver Disease, vol.5, issue.4, pp.873-93, 2001.
DOI : 10.1016/S1089-3261(05)70199-9

B. Bartosch, J. Dubuisson, and F. Cosset, Infectious Hepatitis C Virus Pseudo-particles Containing Functional E1???E2 Envelope Protein Complexes, The Journal of Experimental Medicine, vol.72, issue.5, pp.633-675, 2003.
DOI : 10.1093/emboj/21.12.2893

URL : https://hal.archives-ouvertes.fr/inserm-00133783

S. Fafi-kremer, C. Fauvelle, D. Felmlee, M. Zeisel, Q. Lepiller et al., Neutralizing Antibodies and Pathogenesis of Hepatitis C Virus Infection, Viruses, vol.143, issue.12, pp.2016-2046, 2012.
DOI : 10.1038/nature10168

URL : http://doi.org/10.3390/v4102016

E. Steinmann and T. Pietschmann, Cell Culture Systems for Hepatitis C Virus, Hepatitis C Virus: From Molecular Virology to Antiviral Therapy, pp.17-48, 2013.
DOI : 10.1007/978-3-642-27340-7_2

B. Bartosch, A. Vitelli, C. Granier, C. Goujon, J. Dubuisson et al., Cell Entry of Hepatitis C Virus Requires a Set of Co-receptors That Include the CD81 Tetraspanin and the SR-B1 Scavenger Receptor, Journal of Biological Chemistry, vol.4, issue.43, pp.41624-41654, 2003.
DOI : 10.1053/jhep.2001.27810

J. Verbeeck, P. Maes, P. Lemey, O. Pybus, E. Wollants et al., Investigating the Origin and Spread of Hepatitis C Virus Genotype 5a, Journal of Virology, vol.80, issue.9, pp.4220-4226, 2006.
DOI : 10.1128/JVI.80.9.4220-4226.2006

J. Ward, The hidden epidemic of hepatitis C virus infection in the United States: occult transmission and burden of disease, Top Antivir Med, vol.21, issue.1, pp.15-24, 2013.

R. Bellini, B. Casali, M. Carrieri, C. Zambonelli, P. Rivasi et al., Aedes albopictus (diptera: culicidae) is incompetent as a vector of hepatitis C virus, APMIS, vol.36, issue.1-6, pp.299-302, 1997.
DOI : 10.1093/jmedent/33.3.398

A. Silverman, D. Mccray, S. Gordon, W. Morgan, and E. Walker, Experimental Evidence Against Replication or Dissemination of Hepatitis C Virus in Mosquitoes (Diptera: Culicidae) Using Detection by Reverse Transcriptase Polymerase Chain Reaction, Journal of Medical Entomology, vol.33, issue.3, pp.398-401, 1996.
DOI : 10.1093/jmedent/33.3.398

T. Chang, T. Chang, C. Chen, K. Young, J. Roan et al., Existence of Hepatitis C Virus in Culex quinquefasciatus after Ingestion of Infected Blood: Experimental Approach to Evaluating Transmission by Mosquitoes, Journal of Clinical Microbiology, vol.39, issue.9, pp.3353-3358, 2001.
DOI : 10.1128/JCM.39.9.3353-3355.2001

A. Houldsworth, Exploring the possibility of arthropod transmission of HCV, Journal of Medical Virology, vol.6, issue.465, 2016.
DOI : 10.3390/v6114703

R. Germi, J. Crance, D. Garin, J. Guimet, M. Thelu et al., Mosquito cells bind and replicate hepatitis C virus, Journal of Medical Virology, vol.27, issue.1, pp.6-12, 2001.
DOI : 10.1002/hep.510270332

C. Bieniossek, T. Imasaki, Y. Takagi, and I. Berger, MultiBac: expanding the research toolbox for multiprotein complexes, Trends in Biochemical Sciences, vol.37, issue.2, pp.49-57, 2012.
DOI : 10.1016/j.tibs.2011.10.005

R. Clayton, A. Owsianka, J. Aitken, S. Graham, D. Bhella et al., Analysis of Antigenicity and Topology of E2 Glycoprotein Present on Recombinant Hepatitis C Virus-Like Particles, Journal of Virology, vol.76, issue.15, pp.7672-82, 2002.
DOI : 10.1128/JVI.76.15.7672-7682.2002

N. Ndongo-thiam, P. Berthillon, E. Errazuriz, I. Bordes, D. Sequeira et al., Long-term propagation of serum hepatitis C virus (HCV) with production of enveloped HCV particles in human HepaRG hepatocytes, Hepatology, vol.52, issue.2, pp.406-423, 2011.
DOI : 10.1002/hep.23862

URL : https://hal.archives-ouvertes.fr/hal-00857164

N. Ndongo, Y. Rechoum, D. Sequeira, S. Zoulim, F. Trepo et al., Inhibition of the binding of HCV serum particles to human hepatocytes by E1E2-specific D32.10 monoclonal antibody, Journal of Medical Virology, vol.102, issue.10, pp.1726-1759, 2009.
DOI : 10.1128/JVI.76.3.1181-1193.2002

K. Singh, Growth of Arboviruses in Arthropod Tissue Culture, Adv Virus Res, vol.17, pp.187-206, 1972.
DOI : 10.1016/S0065-3527(08)60750-2

L. Vijayachandran, D. Thimiri-govinda-raj, E. Gupta, K. Maier, J. Gordeliy et al., Gene gymnastics, Bioengineered, vol.3, issue.5, pp.279-87, 2013.
DOI : 10.1016/S0022-2836(05)80360-2

URL : https://hal.archives-ouvertes.fr/hal-01322337

R. Edgar, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1799, 2004.
DOI : 10.1093/nar/gkh340

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC390337

E. Paradis, C. J. Strimmer, and K. , APE: Analyses of Phylogenetics and Evolution in R language, Bioinformatics, vol.20, issue.2, pp.289-90, 2004.
DOI : 10.1093/bioinformatics/btg412

F. Tajima, Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Genetics, vol.123, issue.3, pp.585-95, 1989.

N. Saitou and M. Nei, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol Biol Evol, vol.4, issue.4, pp.406-431, 1987.

J. Peleg, Growth of Arboviruses in Primary Tissue Culture of Aedes Aegypti Embryos *, The American Journal of Tropical Medicine and Hygiene, vol.17, issue.2, pp.219-242, 1968.
DOI : 10.4269/ajtmh.1968.17.219

L. White, Susceptibility of Aedes Albopictus C6/36 cells to viral infection, J Clin Microbiol, vol.25, issue.7, pp.1221-1225, 1987.

M. Hassan, A. Mangoud, S. Etewa, I. Amin, T. Morsy et al., Experimental demonstration of hepatitis C virus (HCV) in an Egyptian strain of Culex Pipiens Complex, J Egypt Soc Parasitol, vol.33, issue.2, pp.373-84, 2003.

C. Gondeau, P. Briolotti, F. Razafy, C. Duret, P. Rubbo et al., In vitro infection of primary human hepatocytes by HCV-positive sera: insights on a highly relevant model, Gut, vol.63, issue.(Pt 10), pp.1490-500, 2014.
DOI : 10.1016/j.etp.2009.10.005

T. Pietschmann, In sero veritas: what serum markers teach us about HCV infection of primary human hepatocytes, Gut, vol.83, issue.9, pp.1375-1382, 2014.
DOI : 10.1128/JVI.00246-09

N. Ndongo, S. Selliah, P. Berthillon, V. Raymond, C. Trépo et al., Expression of E1E2 on Hepatitis C RNA-Containing Particles Released from Primary Cultured Human Hepatocytes Derived from Infected Cirrhotic Livers, Intervirology, vol.54, issue.1, pp.1-9, 2011.
DOI : 10.1159/000318886

URL : https://hal.archives-ouvertes.fr/hal-00860031

Y. Xu, P. Martinez, K. Seron, G. Luo, F. Allain et al., ABSTRACT, Journal of Virology, vol.89, issue.7, pp.3846-58, 2015.
DOI : 10.1128/JVI.03647-14

URL : https://hal.archives-ouvertes.fr/hal-01530404

R. Germi, J. Crance, D. Garin, J. Guimet, H. Lortat-jacob et al., Cellular glycosaminoglycans and low density lipoprotein receptor are involved in hepatitis C virus adsorption, Journal of Medical Virology, vol.69, issue.2, pp.206-221, 2002.
DOI : 10.1016/S1388-1981(00)00024-X

URL : https://hal.archives-ouvertes.fr/hal-01061422

Y. Chen, T. Maguire, R. Hileman, J. Fromm, J. Esko et al., Dengue virus infectivity depends on envelope protein binding to target cell heparan sulfate, Nature Medicine, vol.27, issue.8, pp.866-71, 1997.
DOI : 10.1021/ja951121f

P. Hilgard and R. Stockert, Heparan Sulfate Proteoglycans Initiate Dengue Virus Infection of Hepatocytes, Hepatology, vol.73, issue.5, pp.1069-77, 2000.
DOI : 10.1053/jhep.2000.18713

R. Germi, J. Crance, D. Garin, J. Guimet, H. Lortat-jacob et al., Heparan Sulfate-Mediated Binding of Infectious Dengue Virus Type 2 and Yellow Fever Virus, Virology, vol.292, issue.1, pp.162-170, 2002.
DOI : 10.1006/viro.2001.1232

URL : https://hal.archives-ouvertes.fr/hal-01061419

K. Olson and C. Blair, Flavivirus-Vector Interactions, Molecular Biology and Control of Flaviviruses, 2012.

P. Sinnis, A. Coppi, T. Toida, H. Toyoda, A. Kinoshita-toyoda et al., Mosquito Heparan Sulfate and Its Potential Role in Malaria Infection and Transmission, Journal of Biological Chemistry, vol.99, issue.35, pp.25376-84, 2007.
DOI : 10.1126/science.1734521

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2121605

V. Nene, J. Wortman, D. Lawson, B. Haas, C. Kodira et al., Genome Sequence of Aedes aegypti, a Major Arbovirus Vector, Science, vol.17, issue.7, pp.3161718-3161741, 2007.
DOI : 10.1016/S0168-9525(01)02310-1

URL : https://hal.archives-ouvertes.fr/hal-00156214

T. Sappington, V. Kokoza, W. Cho, and A. Raikhel, Molecular characterization of the mosquito vitellogenin receptor reveals unexpected high homology to the Drosophila yolk protein receptor., Proceedings of the National Academy of Sciences, vol.93, issue.17, pp.8934-8943, 1996.
DOI : 10.1073/pnas.93.17.8934

W. Black, K. Bennett, N. Gorrochótegui-escalante, C. Barillas-mury, I. Fernández-salas et al., Flavivirus Susceptibility in Aedes aegypti, Archives of Medical Research, vol.33, issue.4, pp.379-88, 2002.
DOI : 10.1016/S0188-4409(02)00373-9

T. Walker, C. Jeffries, K. Mansfield, and N. Johnson, Mosquito cell lines: history, isolation, availability and application to assess the threat of arboviral transmission in the United Kingdom, Parasites & Vectors, vol.7, issue.1, p.382, 2014.
DOI : 10.1186/1756-3305-7-382

M. Kraemer, M. Sinka, K. Duda, A. Mylne, F. Shearer et al., The global compendium of Aedes aegypti and Ae albopictus occurrence. Sci Data, p.150035, 2015.

M. Kraemer, M. Sinka, K. Duda, A. Mylne, F. Shearer et al., The global distribution of the arbovirus vectors Aedes aegypti and Ae albopictus, Elife, vol.4, p.8347, 2015.

S. Bhatt, A. Katzourakis, and O. Pybus, Detecting natural selection in RNA virus populations using sequence summary statistics, Infection, Genetics and Evolution, vol.10, issue.3, pp.421-451, 2010.
DOI : 10.1016/j.meegid.2009.06.001

D. Shriner, R. Shankarappa, M. Jensen, D. Nickle, J. Mittler et al., Influence of Random Genetic Drift on Human Immunodeficiency Virus Type 1 env Evolution During Chronic Infection, Genetics, vol.166, issue.3, pp.1155-64, 2004.
DOI : 10.1534/genetics.166.3.1155

A. Kapoor, P. Simmonds, G. Gerold, N. Qaisar, K. Jain et al., Characterization of a canine homolog of hepatitis C virus, Proceedings of the National Academy of Sciences, vol.83, issue.9, pp.11608-11621, 2011.
DOI : 10.1128/JVI.02301-08

A. Kapoor, P. Simmonds, T. Scheel, B. Hjelle, J. Cullen et al., Identification of Rodent Homologs of Hepatitis C Virus and Pegiviruses, mBio, vol.4, issue.2, pp.216-229, 2013.
DOI : 10.1128/mBio.00216-13

T. Scheel, P. Simmonds, and A. Kapoor, Surveying the global virome: Identification and characterization of HCV-related animal hepaciviruses, Antiviral Research, vol.115, pp.83-93, 2015.
DOI : 10.1016/j.antiviral.2014.12.014

O. Pybus, P. Markov, A. Wu, and A. Tatem, Investigating the endemic transmission of the hepatitis C virus, International Journal for Parasitology, vol.37, issue.8-9, pp.8-9839, 2007.
DOI : 10.1016/j.ijpara.2007.04.009