R. Bengis, F. Leighton, J. Fischer, M. Artois, T. Mörner et al., The roleof wildlife in emerging and re-emerging zoonoses, Rev Sci Tech, vol.23, pp.497-511, 2004.

P. Gautret, G. Gray, R. Charrel, N. Odezulu, A. et al., Emerging viral respiratory tract infections???environmental risk factors and transmission, The Lancet Infectious Diseases, vol.14, issue.11, pp.1113-1122, 2014.
DOI : 10.1016/S1473-3099(14)70831-X

J. Mandl, R. Ahmed, L. Barreiro, P. Daszak, J. Epstein et al., Reservoir Host Immune Responses to Emerging Zoonotic Viruses, Cell, vol.160, issue.1-2, pp.20-35, 2015.
DOI : 10.1016/j.cell.2014.12.003

J. Abrantes, W. Van-der-loo, L. Pendu, J. Esteves, and P. , Rabbit haemorrhagic disease (RHD) and rabbit haemorrhagic disease virus (RHDV): a review, Veterinary Research, vol.43, issue.1, p.12, 2011.
DOI : 10.1016/S0168-1702(98)00144-0

URL : https://hal.archives-ouvertes.fr/inserm-00689849

L. Capucci, M. Scicluna, and A. Lavazza, Diagnosis of viral haemorrhagic disease of rabbits and the European brown hare syndrome, Revue Scientifique et Technique de l'OIE, vol.10, issue.2, pp.347-370, 1991.
DOI : 10.20506/rst.10.2.561

P. Marcato, C. Benazzi, G. Vecchi, M. Galeotti, D. Salda et al., Clinical and pathological features of viral haemorrhagic disease of rabbits and the European brown hare syndrome, Revue Scientifique et Technique de l'OIE, vol.10, issue.2, pp.371-392, 1991.
DOI : 10.20506/rst.10.2.560

D. Chasey, M. Lucas, D. Westcott, and M. Williams, European brown hare syndrome in the U.K.; a calicivirus related to but distinct from that of viral haemorrhagic disease in rabbits, Archives of Virology, vol.132, issue.3-4, pp.363-370, 1992.
DOI : 10.1007/BF01309816

A. Fuchs and H. Weissenbock, Comparative histopathological study of rabbit haemorrhagic disease (RHD) and European brown hare syndrome (EBHS), Journal of Comparative Pathology, vol.107, issue.1, pp.103-113, 1992.
DOI : 10.1016/0021-9975(92)90100-9

C. Wirblich, G. Meyers, V. Ohlinger, L. Capucci, U. Eskens et al., European brown hare syndrome virus: relationship to rabbit hemorrhagic disease virus and other caliciviruses, J Virol, vol.68, pp.5164-5173, 1994.

A. Lavazza, M. Scicluna, and L. Capucci, Susceptibility of Hares and Rabbits to the European Brown Hare Syndrome Virus (EBHSV) and Rabbit Haemorrhagic Disease Virus (RHDV) under Experimental Conditions*, Journal of Veterinary Medicine, Series B, vol.68, issue.1-10, pp.401-410, 1996.
DOI : 10.1111/j.1439-0450.1996.tb00332.x

L. Gall, G. Huguet, S. Vende, P. Vautherot, J. Rasschaert et al., European brown hare syndrome virus: molecular cloning and sequencing of the genome, Journal of General Virology, vol.77, issue.8, pp.1693-1697, 1996.
DOI : 10.1099/0022-1317-77-8-1693

N. Nowotny, C. Bascunana, A. Ballagi-pordany, D. Gavier-widen, M. Uhlen et al., Phylogenetic analysis of rabbit haemorrhagic disease and European brown hare syndrome viruses by comparison of sequences from the capsid protein gene, Archives of Virology, vol.142, issue.4, pp.657-673, 1997.
DOI : 10.1007/s007050050109

L. Gall-reculé, G. Zwingelstein, F. Laurent, S. Portejoie, Y. Rasschaert et al., Molecular epidemiology of European brown hare syndrome virus in France between 1989 and 2003, Archives of Virology, vol.68, issue.9, pp.1713-1721, 2006.
DOI : 10.1007/s00705-006-0754-7

A. Lopes, D. Gavier-widén, L. Gall-reculé, G. Esteves, P. Abrantes et al., Complete coding sequences of European brown hare syndrome virus (EBHSV) strains isolated in 1982 in Sweden, Archives of Virology, vol.69, issue.Pt 8, pp.2193-2196, 2013.
DOI : 10.1007/s00705-013-1714-7

A. Lopes, L. Capucci, D. Gavier-widén, L. Gall-reculé, G. Brocchi et al., Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV), Virology, vol.468, issue.470, pp.104-116, 2014.
DOI : 10.1016/j.virol.2014.08.002

S. Liu, H. Xue, B. Pu, and N. Qian, A new viral disease in rabbit, Anim Husb Vet Med, vol.16, pp.253-255, 1984.

J. Boga, R. Casais, M. Marin, J. Martin-alonso, R. Carmenes et al., Molecular cloning, sequencing and expression in Escherichia coli of the capsid protein gene from rabbit haemorrhagic disease virus (Spanish isolate AST/89), Journal of General Virology, vol.75, issue.9, pp.2409-2413, 1994.
DOI : 10.1099/0022-1317-75-9-2409

F. Parra, J. Boga, M. Marin, and R. Casais, The amino terminal sequence of VP60 from rabbit hemorrhagic disease virus supports its putative subgenomic origin, Virus Research, vol.27, issue.3, pp.219-228, 1993.
DOI : 10.1016/0168-1702(93)90034-K

L. Gall, G. Arnauld, C. Boilletot, E. Morisse, J. Rasschaert et al., Molecular epidemiology of rabbit haemorrhagic disease virus outbreaks in France during 1988 to 1995., Journal of General Virology, vol.79, issue.1, pp.11-16, 1998.
DOI : 10.1099/0022-1317-79-1-11

K. Matiz, K. Ursu, S. Kecskemeti, E. Bajmocy, and I. Kiss, Phylogenetic analysis of rabbit haemorrhagic disease virus (RHDV) strains isolated between 1988 and 2003 in eastern Hungary, Archives of Virology, vol.144, issue.8, pp.1659-1666, 2006.
DOI : 10.1007/s00705-006-0730-2

L. Tian, J. Liao, J. Li, W. Zhou, X. Zhang et al., Isolation and identification of a non-haemagglutinating strain of rabbit hemorrhagic disease virus from China and sequence analysis for the VP60 Gene, Virus Genes, vol.18, issue.6, pp.745-752, 2007.
DOI : 10.1007/s11262-007-0155-3

C. Guittre, I. Baginski, L. Gall, G. Prave, M. Trepo et al., Detection of rabbit haemorrhagic disease virus isolates and sequence comparison of the N-terminus of the capsid protein gene by the polymerase chain reaction, Research in Veterinary Science, vol.58, issue.2, pp.128-132, 1995.
DOI : 10.1016/0034-5288(95)90065-9

D. Rasschaert, S. Huguet, M. Madelaine, and J. Vautherot, Sequence and genomic organization of a rabbit hemorrhagic disease virus isolated from a wild rabbit, Virus Genes, vol.17, issue.2, pp.121-132, 1995.
DOI : 10.1007/BF01702655

E. Viaplana and A. Villaverde, Microheterogeneity of p60 capsid protein and the encoding gene among contemporary isolates of rabbit hemorrhagic disease virus, Virus Genes, vol.5, issue.2, pp.189-192, 1996.
DOI : 10.1007/BF00572958

S. Asgari, J. Hardy, and B. Cooke, Sequence analysis of rabbit haemorrhagic disease virus (RHDV) in Australia: alterations after its release, Archives of Virology, vol.144, issue.1, pp.135-145, 1999.
DOI : 10.1007/s007050050490

M. Van-de-bildt, G. Van-bolhuis, F. Van-zijderveld, D. Van-riel, J. Drees et al., Confirmation and Phylogenetic Analysis of Rabbit Hemorrhagic Disease Virus in Free-living Rabbits from the Netherlands, Journal of Wildlife Diseases, vol.42, issue.4, pp.808-812, 2006.
DOI : 10.7589/0090-3558-42.4.808

L. Yang, F. Wang, B. Hu, J. Xue, Y. Hu et al., Development of an RT-PCR for rabbit hemorrhagic disease virus (RHDV) and the epidemiology of RHDV in three eastern provinces of China, Journal of Virological Methods, vol.151, issue.1, pp.24-29, 2008.
DOI : 10.1016/j.jviromet.2008.04.003

B. Hukowska-szematowicz, M. Pawlikowska, and W. Deptula, Genetic variability of Czech and German RHD virus strains, Pol. J. Microbiol, vol.58, pp.237-245, 2009.

P. Kerr, A. Kitchen, and E. Holmes, Origin and Phylodynamics of Rabbit Hemorrhagic Disease Virus, Journal of Virology, vol.83, issue.23, pp.12129-12138, 2009.
DOI : 10.1128/JVI.01523-09

F. Alda, T. Gaitero, M. Suárez, T. Merchán, G. Rocha et al., Evolutionary history and molecular epidemiology of rabbit haemorrhagic disease virus in the Iberian Peninsula and Western Europe, BMC Evolutionary Biology, vol.10, issue.1, p.21067589, 2010.
DOI : 10.1186/1471-2148-10-347

J. Abrantes, A. Lopes, and P. Esteves, Complete Genomic Sequences of Rabbit Hemorrhagic Disease Virus G1 Strains Isolated in the European Rabbit Original Range, Journal of Virology, vol.86, issue.24, p.23166278, 2012.
DOI : 10.1128/JVI.02683-12

P. Esteves, A. Lopes, M. Magalhães, A. Pinheiro, D. Gonçalves et al., Rabbit Hemorrhagic Disease Virus Detected in Pico, Azores, Portugal, Revealed a Unique Endemic Strain with More Than 17 Years of Independent Evolution, Viruses, vol.6, issue.7, pp.2698-2707, 2014.
DOI : 10.3390/v6072698

J. Kovaliski, R. Sinclair, G. Mutze, D. Peacock, T. Strive et al., Molecular epidemiology of Rabbit Haemorrhagic Disease Virus in Australia: when one became many, Molecular Ecology, vol.29, issue.Suppl 2, pp.408-428, 2014.
DOI : 10.1111/mec.12596

L. Capucci, F. Fallacara, S. Grazioli, A. Lavazza, M. Pacciarini et al., A further step in the evolution of rabbit hemorrhagic disease virus: the appearance of the first consistent antigenic variant, Virus Research, vol.58, issue.1-2, pp.115-126, 1998.
DOI : 10.1016/S0168-1702(98)00106-3

O. Farnos, D. Rodriguez, O. Valdes, M. Chiong, F. Parra et al., Molecular and antigenic characterization of rabbit hemorrhagic disease virus isolated in Cuba indicates a distinct antigenic subtype, Archives of Virology, vol.24, issue.6, pp.1215-1221, 2007.
DOI : 10.1007/s00705-006-0926-5

H. Schirrmeier, I. Reimann, B. Kollner, and H. Granzow, Pathogenic, antigenic and molecular properties of rabbit haemorrhagic disease virus (RHDV) isolated from vaccinated rabbits: detection and characterization of antigenic variants, Archives of Virology, vol.144, issue.4, pp.719-735, 1999.
DOI : 10.1007/s007050050538

M. Mcintosh, S. Behan, F. Mohamed, Z. Lu, K. Moran et al., A pandemic strain of calicivirus threatens rabbit industries in the Americas, Virology Journal, vol.4, issue.1, pp.96-17910765, 2007.
DOI : 10.1186/1743-422X-4-96

J. Oem, K. Lee, I. Roh, K. Lee, S. Kim et al., Identification and Characterization of Rabbit Hemorrhagic Disease Virus Genetic Variants Isolated in Korea, Journal of Veterinary Medical Science, vol.71, issue.11, pp.1519-1523, 2009.
DOI : 10.1292/jvms.001519

J. Abrantes, A. Lopes, K. Dalton, F. Parra, and P. Esteves, Detection of RHDVa on the Iberian Peninsula: isolation of an RHDVa strain from a Spanish rabbitry, Archives of Virology, vol.157, issue.Pt 1, pp.321-326, 2014.
DOI : 10.1007/s00705-013-1808-2

L. Gall-reculé, G. Zwingelstein, F. Boucher, S. , L. Normand et al., Detection of a new variant of rabbit haemorrhagic disease virus in France, Veterinary Record, vol.168, issue.5, pp.137-138, 2011.
DOI : 10.1136/vr.d697

K. Dalton, I. Nicieza, A. Balseiro, M. Muguerza, J. Rosell et al., Variant Rabbit Hemorrhagic Disease Virus in Young Rabbits, Spain, Emerging Infectious Diseases, vol.18, issue.12, pp.2009-2012, 2012.
DOI : 10.3201/eid1812.120341

L. Gall-reculé, G. Lavazza, A. Marchandeau, S. Bertagnoli, S. Zwingelstein et al., Emergence of a new lagovirus related to rabbit haemorrhagic disease virus, Veterinary Research, vol.44, issue.1, pp.81-91, 2013.
DOI : 10.1186/1471-2148-10-347

G. Puggioni, P. Cavadini, C. Maestrale, R. Scivoli, G. Botti et al., The new French 2010 Rabbit Hemorrhagic Disease Virus causes an RHD-like disease in the Sardinian Cape hare (Lepus capensis mediterraneus), Veterinary Research, vol.44, issue.1, pp.96-106, 2013.
DOI : 10.1051/vetres/2010010

J. Abrantes, A. Lopes, K. Dalton, P. Melo, J. Correia et al., New variant of rabbit hemorrhagic disease virus, Portugal, Emerg Infect Dis, vol.19, pp.2012-2013, 2013.

K. Dalton, I. Nicieza, J. Abrantes, P. Esteves, and F. Parra, Spread of new variant RHDV in domestic rabbits on the Iberian Peninsula, Veterinary Microbiology, vol.169, issue.1-2, pp.67-73, 2014.
DOI : 10.1016/j.vetmic.2013.12.015

J. Baily, M. Dagleish, M. Graham, M. Maley, and M. Rocchi, RHDV variant 2 presence detected in Scotland, Veterinary Record, vol.174, issue.16, p.411, 2014.
DOI : 10.1136/vr.g2781

V. Simpson, D. Everest, and D. Westcott, RHDV variant 2 and Capillaria hepatica infection in rabbits, Vet Rec, vol.174, p.486, 2014.

A. Camarda, N. Pugliese, P. Cavadini, E. Circella, L. Capucci et al., Detection of the new emerging rabbit haemorrhagic disease type 2 virus (RHDV2) in Sicily from rabbit (Oryctolagus cuniculus) and Italian hare (Lepus corsicanus), Research in Veterinary Science, vol.97, issue.3, pp.642-645, 2014.
DOI : 10.1016/j.rvsc.2014.10.008

A. Lopes, J. Correia, J. Abrantes, P. Melo, M. Ramada et al., Is the new variant RHDV replacing genogroup 1 in Portuguese wild rabbit populations? Viruses, pp.27-36, 2014.

K. Dalton, J. Abrantes, A. Lopes, I. Nicieza, Á. Álvarez et al., Complete genome sequence of two rabbit hemorrhagic disease virus variant b isolates detected on the Iberian Peninsula, Archives of Virology, vol.80, issue.16, pp.877-881, 2015.
DOI : 10.1007/s00705-014-2329-3

D. Westcott and B. Choudhury, Rabbit haemorrhagic disease virus 2-like variant in Great Britain, Veterinary Record, vol.10, issue.3, p.25477331, 2015.
DOI : 10.1136/vr.102830

A. Lopes, K. Dalton, M. Magalhães, F. Parra, P. Esteves et al., Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events, Journal of General Virology, vol.96, issue.6, pp.1309-1319, 2015.
DOI : 10.1099/vir.0.000070

M. Duarte, M. Henriques, S. Barros, T. Fagulha, F. Ramos et al., Detection of RHDV variant 2 in the Azores, Veterinary Record, vol.176, issue.5, p.25634926, 2015.
DOI : 10.1136/vr.h497

C. Calvete, P. Sarto, A. Calvo, F. Monroy, and J. Calvo, Letter - Could the new rabbit haemorrhagic disease virus variant (RHDVb) be fully replacing classical RHD strains in the Iberian Peninsula?, World Rabbit Science, vol.22, issue.1, p.91, 2014.
DOI : 10.4995/wrs.2014.1715

T. Almeida, A. Lopes, M. Magalhães, F. Neves, A. Pinheiro et al., Tracking the evolution of the G1/RHDVb recombinant strains introduced from the Iberian Peninsula to the Azores islands, Portugal, Infection, Genetics and Evolution, vol.34, pp.307-313, 2015.
DOI : 10.1016/j.meegid.2015.07.010

A. Poli, M. Nigro, D. Gallazzi, G. Siroli, A. Lavazza et al., ACUTE HEPATOSIS IN THE EUROPEAN BROWN HARE (LEPUS EUROPAEUS) IN ITALY, Journal of Wildlife Diseases, vol.27, issue.4, pp.621-629, 1991.
DOI : 10.7589/0090-3558-27.4.621

M. Zanni, M. Benassi, M. Scicluna, A. Lavazza, and L. Capucci, Clinical evolution and diagnosis of an outbreak of European brown hare syndrome in hares reared in captivity, Revue Scientifique et Technique de l'OIE, vol.12, issue.3, pp.931-940, 1993.
DOI : 10.20506/rst.12.3.727

M. Scicluna, L. Capucci, and A. Lavazza, European brown hare syndrome in Northern Italy : results of a virological and serological survey, Revue Scientifique et Technique de l'OIE, vol.13, issue.3, pp.893-904, 1994.
DOI : 10.20506/rst.13.3.801

C. Billinis, V. Psychas, D. Tontis, V. Spyrou, P. Birtsas et al., European Brown Hare Syndrome in Wild European Brown Hares from Greece, Journal of Wildlife Diseases, vol.41, issue.4, pp.783-786, 2005.
DOI : 10.7589/0090-3558-41.4.783

D. Chasey and P. Duff, European brown hare syndrome and associated virus particles in the UK, Vet. Rec, vol.126, pp.623-624, 1990.

K. Frölich, J. Fickel, A. Ludwig, D. Lieckfeldt, W. Streich et al., NEW VARIANTS OF EUROPEAN BROWN HARE SYNDROME VIRUS STRAINS IN FREE-RANGING EUROPEAN BROWN HARES (LEPUS EUROPAEUS) FROM SLOVAKIA, Journal of Wildlife Diseases, vol.43, issue.1, pp.89-96, 2007.
DOI : 10.7589/0090-3558-43.1.89

K. Frölich, H. Meyer, Z. Pielowski, L. Ronsholt, S. Sv et al., EUROPEAN BROWN HARE SYNDROME IN FREE-RANGING HARES IN POLAND, Journal of Wildlife Diseases, vol.32, issue.2, pp.280-285, 1996.
DOI : 10.7589/0090-3558-32.2.280

A. Lavazza, G. Vecchi, and . Osservazioni-su-alcuni-episodi-di-mortalità-nelle-lepri, Evidenziazione al microscopio elettronico di una particella virale. Nota preliminare. Selezione Veterinaria, pp.461-467, 1989.

J. Duff, D. Chasey, R. Munro, and M. Wooldridge, European brown hare syndrome in England, Veterinary Record, vol.134, issue.26, pp.669-673, 1994.
DOI : 10.1136/vr.134.26.669

J. Duff, K. Whitwell, and D. Chasey, The emergence and epidemiology of European brown hare syndrome in the UK, Proceedings of the First International Symposium on Caliciviruses, United Kingdom, pp.176-181, 1997.

R. Bascuñana, C. Nowotny, N. Belák, and S. , Detection and differentiation of rabbit hemorrhagic disease and European brown hare syndrome viruses by amplification of VP60 genomic sequences from fresh and fixed tissue specimens, J. Clin. Microbiol, vol.35, pp.2492-2495, 1997.

L. Rodak, B. Smid, L. Valicek, T. Vesely, J. Stepanek et al., Enzyme-linked Immunosorbent Assay of Antibodies to Rabbit Haemorrhagic Disease Virus and Determination of its Major Structural Proteins, Journal of General Virology, vol.71, issue.5, pp.1075-1080, 1990.
DOI : 10.1099/0022-1317-71-5-1075

O. Keefe, J. Tempero, J. Motha, M. Hansen, M. Atkinsona et al., Serology of rabbit haemorrhagic disease virus in wild rabbits before and after release of the virus in New Zealand, Veterinary Microbiology, vol.66, issue.1, pp.29-40, 1999.
DOI : 10.1016/S0378-1135(98)00307-1

B. Cooke, A. Robinson, J. Merchant, A. Nardin, and L. Capucci, Use of ELISAs in field studies of rabbit haemorrhagic disease (RHD) in Australia, Epidemiology and Infection, vol.124, issue.3, pp.563-576, 2000.
DOI : 10.1017/S0950268899003994

A. Robinson, P. Kirkland, R. Forrester, L. Capucci, B. Cooke et al., Serological evidence for the presence of a calicivirus in Australian wild rabbits, Oryctolagus cuniculus, before the introduction of rabbit haemorrhagic disease virus (RHDV): its potential influence on the specificity of a competitive ELISA for RHDV, Wildlife Research, vol.29, issue.6, pp.655-662, 2002.
DOI : 10.1071/WR00096

A. Lavazza, P. Cavadini, I. Barbieri, P. Tizzani, A. Pinheiro et al., Field and experimental data indicate that the eastern cottontail (Sylvilagus floridanus) is susceptible to infection with European brown hare syndrome (EBHS) virus and not with rabbit haemorrhagic disease (RHD) virus, Veterinary Research, vol.46, issue.1, pp.13-25828691, 2015.
DOI : 10.1007/s10344-010-0422-9

URL : https://hal.archives-ouvertes.fr/hal-01290661

A. Lopes, S. Marques, E. Silva, M. Magalhaes, A. Pinheiro et al., Detection of RHDV strains in the Iberian hare (Lepus granatensis): earliest evidence of rabbit lagovirus cross-species infection, Vet Res, vol.45, pp.94-104, 2014.
URL : https://hal.archives-ouvertes.fr/inserm-01072010

J. Abrantes, P. Esteves, and W. Van-der-loo, Evidence for recombination in the major capsid gene VP60 of the rabbit haemorrhagic disease virus (RHDV), Archives of Virology, vol.68, issue.2, pp.329-335, 2008.
DOI : 10.1007/s00705-007-1084-0

N. Forrester, S. Moss, S. Turner, H. Schirrmeier, and E. Gould, Recombination in rabbit haemorrhagic disease virus: Possible impact on evolution and epidemiology, Virology, vol.376, issue.2, pp.390-396, 2008.
DOI : 10.1016/j.virol.2008.03.023