J. Rauch, G. O. Serex, and A. Proteomex, SEREX, Proteomex, AMIDA, and beyond: Serological screening technologies for target identification, PROTEOMICS ??? CLINICAL APPLICATIONS, vol.9, issue.3, pp.355-371, 2008.
DOI : 10.1002/prca.200780064

A. Petersen, T. Dresselhaus, K. Grobe, and W. Becker, Proteome analysis of maize pollen for allergy-relevant components, PROTEOMICS, vol.339, issue.23, pp.6317-6325, 2006.
DOI : 10.1002/pmic.200600173

D. Lefranc, L. Almeras, S. Dubucquoi, J. De-seze, P. Vermersch et al., Distortion of the Self-Reactive IgG Antibody Repertoire in Multiple Sclerosis as a New Diagnostic Tool, The Journal of Immunology, vol.172, issue.1, pp.669-678, 1950.
DOI : 10.4049/jimmunol.172.1.669

L. Almeras, D. Lefranc, H. Drobecq, J. De-seze, S. Dubucquoi et al., New antigenic candidates in multiple sclerosis: Identification by serological proteome analysis, PROTEOMICS, vol.4, issue.7, pp.2184-2194, 2004.
DOI : 10.1002/pmic.200300732

H. Zephir, L. Almeras, E. Behi, M. Dussart, P. De-seze et al., Diversified serum IgG response involving non-myelin CNS proteins during experimental autoimmune encephalomyelitis, Journal of Neuroimmunology, vol.179, issue.1-2, pp.53-64, 2006.
DOI : 10.1016/j.jneuroim.2006.06.016

D. Lefranc, D. Launay, S. Dubucquoi, J. De-seze, P. Dussart et al., Characterization of discriminant human brain antigenic targets in neuropsychiatric systemic lupus erythematosus using an immunoproteomic approach, Arthritis & Rheumatism, vol.241, issue.10, pp.3420-3432, 2007.
DOI : 10.1002/art.22863

M. Caron, G. Choquet-kastylevsky, and R. Joubert-caron, Cancer Immunomics Using Autoantibody Signatures for Biomarker Discovery, Molecular & Cellular Proteomics, vol.6, issue.7, pp.1115-1122, 2007.
DOI : 10.1074/mcp.R600016-MCP200

S. Croci, C. Recktenwald, R. Lichtenfels, G. Nicoletti, S. Dressler et al., Proteomic and PROTEOMEX profiling of mammary cancer progression in a HER-2/neu oncogene-driven animal model system, PROTEOMICS, vol.28, issue.21, pp.3835-3853, 2010.
DOI : 10.1002/pmic.200900643

R. Lichtenfels, R. Kellner, D. Atkins, J. Bukur, A. Ackermann et al., Identification of metabolic enzymes in renal cell carcinoma utilizing PROTEOMEX analyses, Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, vol.1646, issue.1-2, pp.21-31, 2003.
DOI : 10.1016/S1570-9639(02)00547-2

J. Liu, X. Xing, H. Huang, Y. Jiang, H. He et al., Identification of antigenic proteins associated with trichloroethylene-induced autoimmune disease by serological proteome analysis, Toxicology and Applied Pharmacology, vol.240, issue.3, pp.393-400, 2009.
DOI : 10.1016/j.taap.2009.07.031

C. Klade, T. Voss, E. Krystek, H. Ahorn, K. Zatloukal et al., Identification of tumor antigens in renal cell carcinoma by serological proteome analysis, 7<890::AID-PROT890>3.0.CO;2-Z PMID, pp.890-898, 2001.

M. Forgber, R. Basu, K. Roychoudhury, S. Theinert, S. Roy et al., Mapping the Antigenicity of the Parasites in Leishmania donovani Infection by, PLoS ONE, vol.1, p.17183669, 2006.

S. Bunk, I. Susnea, J. Rupp, J. Summersgill, M. Maass et al., Immunoproteomic Identification and Serological Responses to Novel Chlamydia pneumoniae Antigens That Are Associated with Persistent C. pneumoniae Infections, The Journal of Immunology, vol.180, issue.8, pp.5490-5498, 2008.
DOI : 10.4049/jimmunol.180.8.5490

Y. Zhu, C. Cai, W. Zhang, H. Guo, J. Zhang et al., Immunoproteomic Analysis of Human Serological Antibody Responses to Vaccination with Whole-Cell Pertussis Vaccine (WCV), PLoS ONE, vol.46, issue.11, p.21170113, 2010.
DOI : 10.1371/journal.pone.0013915.s003

S. Howie, P. Horner, A. Horne, and G. Entrican, Immunity and vaccines against sexually transmitted Chlamydia trachomatis infection, Current Opinion in Infectious Diseases, vol.24, issue.1, pp.56-61, 2011.
DOI : 10.1097/QCO.0b013e3283421081

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3211059

L. Maréchal, C. Jardin, J. , J. G. Even, S. Pulido et al., Staphylococcus aureus seroproteomes discriminate ruminant isolates causing mild or severe mastitis, Veterinary Research, vol.42, issue.1, pp.35-45, 2011.
DOI : 10.1128/IAI.71.8.4633-4641.2003

N. Seyffert, L. Maréchal, C. Jardin, J. Mcculloch, J. Rosado et al., Staphylococcus aureus proteins differentially recognized by the ovine immune response in mastitis or nasal carriage, Veterinary Microbiology, vol.157, issue.3-4, pp.439-447, 2012.
DOI : 10.1016/j.vetmic.2012.01.016

URL : https://hal.archives-ouvertes.fr/hal-01209500

J. Petrak, R. Ivanek, O. Toman, R. Cmejla, J. Cmejlova et al., D??j?? vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins, PROTEOMICS, vol.2, issue.9, pp.1744-1749, 2008.
DOI : 10.1002/pmic.200700919

R. Unwin, P. Harnden, D. Pappin, D. Rahman, P. Whelan et al., Serological and proteomic evaluation of antibody responses in the identification of tumor antigens in renal cell carcinoma, PROTEOMICS, vol.3, issue.1, pp.45-55, 2003.
DOI : 10.1002/pmic.200390008

B. Tomaino, P. Cappello, M. Capello, C. Fredolini, A. Ponzetto et al., Autoantibody Signature in Human Ductal Pancreatic Adenocarcinoma, Journal of Proteome Research, vol.6, issue.10, pp.4025-4031, 2007.
DOI : 10.1021/pr070281a

I. Lupi, K. Broman, S. Tzou, A. Gutenberg, E. Martino et al., Novel autoantigens in autoimmune hypophysitis, Clinical Endocrinology, vol.448, issue.2, pp.269-278, 2008.
DOI : 10.1111/j.1365-2265.2008.03180.x

A. Servettaz, P. Guilpain, L. Camoin, P. Mayeux, C. Broussard et al., Identification of target antigens of antiendothelial cell antibodies in healthy individuals: A proteomic approach, PROTEOMICS, vol.1, issue.5, pp.1000-1008, 2008.
DOI : 10.1002/pmic.200700794

A. Régent, H. Dib, K. Ly, C. Agard, M. Tamby et al., Identification of target antigens of antiendothelial cell and anti-vascular smooth muscle cell antibodies in patients with giant cell arteritis: a proteomic approach, Arthritis Res Ther, vol.13, pp.10-1186, 2011.

T. Nakanishi, T. Takeuchi, K. Ueda, H. Murao, and A. Shimizu, Detection of eight antibodies in cancer patients??? sera against proteins derived from the adenocarcinoma A549 cell line using proteomics-based analysis, Journal of Chromatography B, vol.838, issue.1, pp.15-20, 2006.
DOI : 10.1016/j.jchromb.2006.04.009

F. Yang, X. Z. Zhang, X. Li, C. Zhang, P. Li et al., Identification of Tumor Antigens in Human Lung Squamous Carcinoma by Serological Proteome Analysis, Journal of Proteome Research, vol.6, issue.2, pp.751-758, 2007.
DOI : 10.1021/pr0602287

S. Klein-scory, S. Kübler, H. Diehl, C. Eilert-micus, A. Reinacher-schick et al., Immunoscreening of the extracellular proteome of colorectal cancer cells, BMC Cancer, vol.38, issue.Pt 17, p.20184735, 2010.
DOI : 10.1016/j.humpath.2007.02.017

B. Hamrita, K. Chahed, M. Kabbage, C. Guillier, M. Trimeche et al., Identification of tumor antigens that elicit a humoral immune response in breast cancer patients' sera by serological proteome analysis (SERPA), Clinica Chimica Acta, vol.393, issue.2, pp.95-102, 2008.
DOI : 10.1016/j.cca.2008.03.017

G. Bussone, H. Dib, M. Tamby, C. Broussard, C. Federici et al., Identification of new autoantibody specificities directed at proteins involved in the transforming growth factor ?? pathway in patients with systemic sclerosis, Arthritis Research & Therapy, vol.13, issue.3, pp.10-1186, 2011.
DOI : 10.1002/art.10521

URL : https://hal.archives-ouvertes.fr/inserm-00606111

L. Li, S. Chen, C. Yu, Y. Li, and S. Wang, Identification of Hepatocellular-Carcinoma-Associated Antigens and Autoantibodies by Serological Proteome Analysis Combined with Protein Microarray, Journal of Proteome Research, vol.7, issue.2, pp.611-620, 2007.
DOI : 10.1021/pr070525r

Q. Xia, F. Lu, H. Yan, H. Wang, X. Feng et al., Autoantibody Profiling of Chinese Patients with Autoimmune Hepatitis Using Immunoproteomic Analysis, Journal of Proteome Research, vol.7, issue.5, pp.1963-1970, 2008.
DOI : 10.1021/pr700861s

O. Massa, M. Alessio, L. Russo, G. Nardo, V. Bonetto et al., Serological Proteome Analysis (SERPA) as a tool for the identification of new candidate autoantigens in type 1 diabetes, Journal of Proteomics, vol.82, pp.263-273, 2013.
DOI : 10.1016/j.jprot.2013.02.030

L. Naour, F. Brichory, F. Misek, D. Bréchot, C. Hanash et al., A Distinct Repertoire of Autoantibodies in Hepatocellular Carcinoma Identified by Proteomic Analysis, Molecular & Cellular Proteomics, vol.1, issue.3, pp.197-203, 2002.
DOI : 10.1074/mcp.M100029-MCP200

L. Canelle, J. Bousquet, C. Pionneau, L. Deneux, N. Imam-sghiouar et al., An efficient proteomics-based approach for the screening of autoantibodies, Journal of Immunological Methods, vol.299, issue.1-2, pp.77-89, 2005.
DOI : 10.1016/j.jim.2005.01.015

Y. He, Y. Wu, Z. Mou, W. Li, L. Zou et al., Proteomics-based identification of HSP60 as a tumor-associated antigen in colorectal cancer, PROTEOMICS ??? Clinical Applications, vol.77, issue.3, pp.336-342, 2007.
DOI : 10.1002/prca.200600718

B. Terrier, M. Tamby, L. Camoin, P. Guilpain, C. Broussard et al., Identification of Target Antigens of Antifibroblast Antibodies in Pulmonary Arterial Hypertension, American Journal of Respiratory and Critical Care Medicine, vol.177, issue.10, pp.1128-1134, 2008.
DOI : 10.1164/rccm.200707-1015OC

B. Terrier, M. Tamby, L. Camoin, P. Guilpain, A. Bérezné et al., Antifibroblast antibodies from systemic sclerosis patients bind to {alpha}-enolase and are associated with interstitial lung disease

S. Huguet, V. Labas, J. Duclos-vallee, A. Bruneel, J. Vinh et al., Heterogeneous nuclear ribonucleoprotein A2/B1 identified as an autoantigen in autoimmune hepatitis by proteome analysis, PROTEOMICS, vol.4, issue.5, pp.1341-1345, 2004.
DOI : 10.1002/pmic.200300757

L. De-monte, F. Sanvito, S. Olivieri, F. Viganò, C. Doglioni et al., Serological Immunoreactivity against Colon Cancer Proteome Varies upon Disease Progression, Journal of Proteome Research, vol.7, issue.2, pp.504-514, 2008.
DOI : 10.1021/pr070360m

Q. Li, Y. Lv, C. Li, X. Yi, H. Long et al., Vitiligo Autoantigen VIT75 Is Identified as Lamin A in Vitiligo by Serological Proteome Analysis Based on Mass Spectrometry, Journal of Investigative Dermatology, vol.131, issue.3, pp.727-734, 2010.
DOI : 10.1038/jid.2010.341

A. Suzuki, A. Iizuka, M. Komiyama, M. Takikawa, A. Kume et al., Identification of melanoma antigens using a Serological Proteome Approach (SERPA), Cancer Genomics-Proteomics, vol.7, pp.17-23, 2010.

Y. Fujita, T. Nakanishi, M. Hiramatsu, H. Mabuchi, Y. Miyamoto et al., Proteomics-Based Approach Identifying Autoantibody against Peroxiredoxin VI as a Novel Serum Marker in Esophageal Squamous Cell Carcinoma, Clinical Cancer Research, vol.12, issue.21, pp.6415-6420, 2006.
DOI : 10.1158/1078-0432.CCR-06-1315

E. Ballot, A. Bruneel, V. Labas, and C. Johanet, Identification of Rat Targets of Anti-Soluble Liver Antigen Autoantibodies by Serologic Proteome Analysis, Clinical Chemistry, vol.49, issue.4, pp.634-643, 2003.
DOI : 10.1373/49.4.634

B. Peng, X. Huang, E. Nakayasu, J. Petersen, S. Qiu et al., Using Immunoproteomics to Identify Alpha-enolase as an Autoantigen in Liver Fibrosis, Journal of Proteome Research, vol.12, issue.4, pp.1789-1796, 2013.
DOI : 10.1021/pr3011342

V. Saulot, O. Vittecoq, R. Charlionet, P. Fardellone, C. Lange et al., Presence of autoantibodies to the glycolytic enzyme ??-enolase in sera from patients with early rheumatoid arthritis, Arthritis & Rheumatism, vol.38, issue.5, pp.1196-1201, 2002.
DOI : 10.1002/art.10252

A. Kinloch, V. Tatzer, R. Wait, D. Peston, K. Lundberg et al., Identification of citrullinated alpha-enolase as a candidate autoantigen in rheumatoid arthritis, Arthritis Research & Therapy, vol.7, issue.6, pp.1421-1429, 2005.
DOI : 10.1186/ar1845

J. Stulík, L. Hernychová, S. Porkertova, O. Pozler, L. Tu\vcková et al., Identification of new celiac disease autoantigens using proteomic analysis, PROTEOMICS, vol.3, issue.6, pp.951-956, 2003.
DOI : 10.1002/pmic.200300370

K. Lee, H. Chung, H. Kim, S. Oh, M. Ha et al., Human ?-enolase from endothelial cells as a target antigen of anti-endothelial cell antibody in Beh???et's disease, Arthritis & Rheumatism, vol.11, issue.7, pp.2025-2035, 2003.
DOI : 10.1002/art.11074

Y. Okunuki, Y. Usui, M. Takeuchi, T. Kezuka, T. Hattori et al., Proteomic surveillance of autoimmunity in Behcet's disease with uveitis: Selenium binding protein is a novel autoantigen in Behcet's disease, Experimental Eye Research, vol.84, issue.5, pp.823-831, 2007.
DOI : 10.1016/j.exer.2007.01.003

J. Cui, W. Li, J. Wang, A. Li, H. Li et al., Proteomics-based Identification of Human Acute Leukemia Antigens That Induce Humoral Immune Response, Molecular & Cellular Proteomics, vol.4, issue.11, pp.1718-1724, 2005.
DOI : 10.1074/mcp.M400165-MCP200

J. Minden, Comparative Proteomics and Difference Gel Electrophoresis, BioTechniques, vol.43, issue.6, pp.739-18251249, 2007.
DOI : 10.2144/000112653

T. Cottrell, J. Hall, A. Rosen, and L. Casciola-rosen, Identification of novel autoantigens by a triangulation approach, Journal of Immunological Methods, vol.385, issue.1-2, pp.35-44, 2012.
DOI : 10.1016/j.jim.2012.07.024

P. Guilpain, A. Servettaz, M. Tamby, Y. Chanseaud, T. N. Garcia-de-la-pena-lefebvre et al., A Combined SDS-PAGE and Proteomics Approach to Identify Target Autoantigens in Healthy Individuals and Patients with Autoimmune Diseases, Annals of the New York Academy of Sciences, vol.1109, issue.1, pp.538-549, 2007.
DOI : 10.1196/annals.1398.060

N. Beyer, J. Milthers, B. Lauridsen, A. Houen, G. et al., Autoantibodies to the proteasome in monosymptomatic optic neuritis may predict progression to multiple sclerosis, Scandinavian Journal of Clinical and Laboratory Investigation, vol.48, issue.5, pp.696-706, 2007.
DOI : 10.1111/j.1600-0404.1991.tb04713.x

M. Tamesa, Y. Kuramitsu, M. Fujimoto, N. Maeda, Y. Nagashima et al., Detection of autoantibodies against cyclophilin A and triosephosphate isomerase in sera from breast cancer patients by proteomic analysis, ELECTROPHORESIS, vol.230, issue.12, pp.2168-2181, 2009.
DOI : 10.1002/elps.200800675

J. Kahn, V. Dutoit-lefevre, S. Duban-deweer, P. Chafey, G. Pottiez et al., Comparative Proteomic Analysis of Blood Eosinophils Reveals Redox Signaling Modifications in Patients with FIP1L1-PDGFRA-Associated Chronic Eosinophilic Leukemia, Journal of Proteome Research, vol.10, issue.4, pp.1468-1480, 2011.
DOI : 10.1021/pr100836p

J. Kyhse-andersen, Electroblotting of multiple gels: a simple apparatus without buffer tank for rapid transfer of proteins from polycrylamide to nitrocellulose, Journal of Biochemical and Biophysical Methods, vol.10, issue.3-4, pp.203-209, 1984.
DOI : 10.1016/0165-022X(84)90040-X

A. Farinazzo, B. Gini, A. Milli, F. Ruffini, S. Marconi et al., 2D immunomic approach for the study of IgG autoantibodies in the experimental model of multiple sclerosis, Journal of Neuroimmunology, vol.232, issue.1-2, pp.63-67, 2011.
DOI : 10.1016/j.jneuroim.2010.10.004

V. Goëb, M. Thomas-l-'otellier, R. Daveau, R. Charlionet, P. Fardellone et al., Candidate autoantigens identified by mass spectrometry in early rheumatoid arthritis are chaperones and citrullinated glycolytic enzymes, Arthritis Research & Therapy, vol.11, issue.2, pp.10-1186, 2009.
DOI : 10.1186/ar2644

E. Beleoken, R. Sobesky, L. Caer, J. , L. Naour et al., Immunoproteomic Analysis of Potentially Severe Non-Graft-Versus-Host Disease Hepatitis After Allogenic Bone Marrow Transplantation, Hepatology, vol.1109, issue.2, pp.689-699, 2013.
DOI : 10.1002/hep.26024

URL : https://hal.archives-ouvertes.fr/hal-00798265

I. Garaguso and J. Borlak, A Rapid Screening Assay to Search for Phosphorylated Proteins in Tissue Extracts, PLoS ONE, vol.217, issue.11, p.23166814, 2012.
DOI : 10.1371/journal.pone.0050025.s003

N. Iizuka, K. Okamoto, R. Matsushita, M. Kimura, K. Nagai et al., Identification of autoantigens specific for systemic lupus erythematosus with central nervous system involvement, Lupus, vol.25, issue.6, pp.717-726, 2009.
DOI : 10.1177/0961203309357764

A. Kimura, Y. Kanoh, T. Sakurai, A. Koumura, M. Yamada et al., Antibodies in patients with neuropsychiatric systemic lupus erythematosus, Neurology, vol.74, issue.17, pp.1372-1379, 2010.
DOI : 10.1212/WNL.0b013e3181dad590

T. Sakurai, A. Kimura, M. Yamada, A. Koumura, Y. Hayashi et al., Identification of antibodies as biological markers in serum from multiple sclerosis patients by immunoproteomic approach, Journal of Neuroimmunology, vol.233, issue.1-2, pp.175-180, 2011.
DOI : 10.1016/j.jneuroim.2010.11.003

P. Donoghue, C. Mcmanus, O. Donoghue, N. Pennington, S. Dunn et al., CyDye Immunoblotting for Proteomics: Co-detection of specific immunoreactive and total protein profiles, PROTEOMICS, vol.1, issue.24, pp.6400-6404, 2006.
DOI : 10.1002/pmic.200600139

A. Fontaine, M. Pophillat, S. Bourdon, C. Villard, M. Belghazi et al., Specific antibody responses against membrane proteins of erythrocytes infected by Plasmodium falciparum of individuals briefly exposed to malaria, Malaria Journal, vol.9, issue.1, pp.276-286, 2010.
DOI : 10.1186/1475-2875-9-276

URL : https://hal.archives-ouvertes.fr/inserm-00617224

B. Lind, S. Hagner-mcwhirter, S. Elfineh, L. Molin, M. Jorsback et al., Detection of tyrosine phosphorylated proteins by combination of immunoaffinity enrichment, two-dimensional difference gel electrophoresis and fluorescent Western blotting, Biochemical and Biophysical Research Communications, vol.401, issue.4, pp.581-585, 2010.
DOI : 10.1016/j.bbrc.2010.09.104

M. Grandjean, A. Sermeus, S. Branders, F. Defresne, M. Dieu et al., Hypoxia Integration in the Serological Proteome Analysis Unmasks Tumor Antigens and Fosters the Identification of Anti-Phos- pho-eEF2 Antibodies as Potential Cancer Biomarkers, PloS One, vol.8, p.24130777, 2013.

Y. Katsumata, Y. Kawaguchi, S. Baba, S. Hattori, K. Tahara et al., Identification of Three New Autoantibodies Associated with Systemic Lupus Erythematosus Using Two Proteomic Approaches, Molecular & Cellular Proteomics, vol.10, issue.6, 2011.
DOI : 10.1074/mcp.M110.005330