A. Read and L. Taylor, The Ecology of Genetically Diverse Infections, Science, vol.292, issue.5519, pp.1099-1102, 2001.
DOI : 10.1126/science.1059410

J. De-roode, M. Helinski, M. Anwar, and A. Read, Dynamics of multiple infection and within-host competition in genetically diverse malaria infections, Am Nat, vol.166, pp.531-542, 2005.

A. Bell, J. De-roode, D. Sim, and A. Read, WITHIN-HOST COMPETITION IN GENETICALLY DIVERSE MALARIA INFECTIONS: PARASITE VIRULENCE AND COMPETITIVE SUCCESS, Evolution, vol.62, issue.Suppl 1, pp.1358-1371, 2006.
DOI : 10.1111/j.0014-3820.2006.tb01215.x

T. Anderson, B. Haubold, J. Williams, J. Estrada-franco, L. Richardson et al., Microsatellite Markers Reveal a Spectrum of Population Structures in the Malaria Parasite Plasmodium falciparum, Molecular Biology and Evolution, vol.17, issue.10, pp.1467-1482, 2000.
DOI : 10.1093/oxfordjournals.molbev.a026247

T. Anderson, X. Su, M. Bockarie, M. Lagog, and K. Day, Twelve microsatellite markers for characterization of Plasmodium falciparum from finger-prick blood samples, Parasitology, vol.119, issue.2, pp.113-125, 1999.
DOI : 10.1017/S0031182099004552

L. Certain and C. Sibley, Plasmodium falciparum: A novel method for analyzing haplotypes in mixed infections, Experimental Parasitology, vol.115, issue.3, pp.233-241, 2007.
DOI : 10.1016/j.exppara.2006.09.003

M. Stephens, N. Smith, and P. Donnelly, A New Statistical Method for Haplotype Reconstruction from Population Data, The American Journal of Human Genetics, vol.68, issue.4, pp.978-989, 2001.
DOI : 10.1086/319501

M. Stephens and P. Donnelly, A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data, The American Journal of Human Genetics, vol.73, issue.5, pp.1162-1169, 2003.
DOI : 10.1086/379378

J. Miao, X. Li, and L. Cui, Cloning of Plasmodium falciparum by single-cell sorting, Experimental Parasitology, vol.126, issue.2, pp.198-202, 2010.
DOI : 10.1016/j.exppara.2010.04.022

S. Auburn, S. Campino, T. Clark, A. Djimde, I. Zongo et al., An Effective Method to Purify Plasmodium falciparum DNA Directly from Clinical Blood Samples for Whole Genome High-Throughput Sequencing, PLoS ONE, vol.25, issue.7, p.22213, 2011.
DOI : 10.1371/journal.pone.0022213.t001

A. Melnikov, K. Galinsky, P. Rogov, T. Fennell, D. Van-tyne et al., Hybrid selection for sequencing pathogen genomes from clinical samples, Genome Biology, vol.12, issue.8, p.73, 2011.
DOI : 10.1371/journal.pgen.0020190

H. Burbano, E. Hodges, R. Green, A. Briggs, J. Krause et al., Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture, Science, vol.328, issue.5979, pp.723-725, 2010.
DOI : 10.1126/science.1188046

L. Terstappen and M. Loken, Five-dimensional flow cytometry as a new approach for blood and bone marrow differentials, Cytometry, vol.9, issue.6, pp.548-556, 1988.
DOI : 10.1002/cyto.990090607

K. Pattanapanyasat, S. Thaithong, D. Kyle, R. Udomsangpetch, K. Yongvanitchit et al., Flow cytometric assessment of hydroxypyridinone iron chelators on in vitro growth of drug-resistant malaria, Cytometry, vol.27, issue.1, pp.84-91, 1997.
DOI : 10.1002/(SICI)1097-0320(19970101)27:1<84::AID-CYTO11>3.0.CO;2-O

J. Loureiro, E. Rodriguez, J. Dolezel, and C. Santos, Comparison of Four Nuclear Isolation Buffers for Plant DNA Flow Cytometry, Annals of Botany, vol.98, issue.3, pp.679-689, 2006.
DOI : 10.1093/aob/mcl141

J. Ling, G. Zhuang, B. Tazon-vega, C. Zhang, B. Cao et al., Evaluation of genome coverage and fidelity of multiple displacement amplification from single cells by SNP array, Molecular Human Reproduction, vol.15, issue.11, pp.739-747, 2009.
DOI : 10.1093/molehr/gap066

B. Grimberg, J. Erickson, R. Sramkoski, J. Jacobberger, and P. Zimmerman, Monitoring Plasmodium falciparum growth and development by UV flow cytometry using an optimized Hoechst-thiazole orange staining strategy, Cytometry A, vol.73, pp.546-554, 2008.

F. Razakandrainibe, P. Durand, J. Koella, D. Meeus, T. Rousset et al., "Clonal" population structure of the malaria agent Plasmodium falciparum in high-infection regions, Proceedings of the National Academy of Sciences, vol.102, issue.48, pp.17388-17393, 2005.
DOI : 10.1073/pnas.0508871102

URL : https://hal.archives-ouvertes.fr/halsde-00325183

S. Elsayed, K. Plewes, D. Church, B. Chow, and K. Zhang, Use of Molecular Beacon Probes for Real-Time PCR Detection of Plasmodium falciparum and Other Plasmodium Species in Peripheral Blood Specimens, Journal of Clinical Microbiology, vol.44, issue.2, pp.622-624, 2006.
DOI : 10.1128/JCM.44.2.622-624.2006

N. Bourgeois, A. Boutet, P. Bousquet, D. Basset, C. Douard-enault et al., Comparison of three real-time PCR methods with blood smears and rapid diagnostic test in Plasmodium sp. infection, Clinical Microbiology and Infection, vol.16, issue.8, pp.1305-1311, 2009.
DOI : 10.1111/j.1469-0691.2009.02933.x

S. Chevalley, A. Coste, A. Lopez, B. Pipy, and A. Valentin, Flow cytometry for the evaluation of anti-plasmodial activity of drugs on Plasmodium falciparum gametocytes, Malaria Journal, vol.9, issue.1, p.49, 2010.
DOI : 10.1186/1475-2875-9-49

K. Ross, N. Haites, and K. Kelly, Repeated freezing and thawing of peripheral blood and DNA in suspension: effects on DNA yield and integrity., Journal of Medical Genetics, vol.27, issue.9, pp.569-570, 1990.
DOI : 10.1136/jmg.27.9.569

D. Frumkin, A. Wasserstrom, S. Itzkovitz, A. Harmelin, G. Rechavi et al., Amplification of multiple genomic loci from single cells isolated by laser micro-dissection of tissues, BMC Biotechnology, vol.8, issue.1, p.17, 2008.
DOI : 10.1186/1472-6750-8-17

J. Whaun, C. Rittershaus, and S. Ip, Rapid identification and detection of parasitized human red cells by automated flow cytometry, Cytometry, vol.193, issue.2, pp.117-122, 1983.
DOI : 10.1002/cyto.990040204

J. Hare, Two-color flow-cytometric analysis of the growth cycle of Plasmodium falciparum in vitro: identification of cell cycle compartments., Journal of Histochemistry & Cytochemistry, vol.34, issue.12, pp.1651-1658, 1986.
DOI : 10.1177/34.12.2431031

K. Sriprawat, S. Kaewpongsri, R. Suwanarusk, M. Leimanis, U. Lek-uthai et al., Effective and cheap removal of leukocytes and platelets from Plasmodium vivax infected blood, Malaria Journal, vol.8, issue.1, p.115, 2009.
DOI : 10.1186/1475-2875-8-115