S. Paabo, Molecular cloning of Ancient Egyptian mummy DNA, Nature, vol.65, issue.6012, pp.644-645, 1985.
DOI : 10.1038/314644a0

M. Drancourt and D. Raoult, Palaeomicrobiology: current issues and perspectives, Nature Reviews Microbiology, vol.102, issue.72, pp.23-35, 2005.
DOI : 10.1046/j.1472-765X.1997.00066.x

M. Spigelman and E. Lemma, The use of the polymerase chain reaction (PCR) to detectMycobacterium tuberculosis in ancient skeletons, International Journal of Osteoarchaeology, vol.161, issue.2, pp.137-143, 1993.
DOI : 10.1002/oa.1390030211

T. Lindahl, Instability and decay of the primary structure of DNA, Nature, vol.362, issue.6422, pp.709-715, 1993.
DOI : 10.1038/362709a0

M. Hofreiter, D. Serre, H. Poinar, M. Kuch, and S. Paabo, Ancient DNA, Nature Reviews Genetics, vol.288, issue.5, pp.353-359, 2001.
DOI : 10.1038/35072071

M. Gilbert, J. Binladen, W. Miller, C. Wiuf, E. Willerslev et al., Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis, Nucleic Acids Research, vol.35, issue.1, pp.1-10, 2007.
DOI : 10.1093/nar/gkl483

M. Hofreiter, V. Jaenicke, D. Serre, A. Haeseler, and S. Paabo, DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA, Nucleic Acids Research, vol.29, issue.23, pp.4793-4799, 2001.
DOI : 10.1093/nar/29.23.4793

E. Willerslev and A. Cooper, Review Paper. Ancient DNA, Proceedings of the Royal Society B: Biological Sciences, vol.272, issue.1558, pp.3-16, 2005.
DOI : 10.1098/rspb.2004.2813

H. Poinar, M. Hoss, J. Bada, and S. Paabo, Amino Acid Racemization and the Preservation of Ancient DNA, Science, vol.272, issue.5263, pp.864-866, 1996.
DOI : 10.1126/science.272.5263.864

C. Smith, A. Chamberlain, M. Riley, A. Cooper, C. Stringer et al., Neanderthal DNA. Not just old but old and cold? Nature, pp.771-772, 2001.

A. Cooper and H. Poinar, Ancient DNA: Do It Right or Not at All, Science, vol.289, issue.5482, p.1139, 2000.
DOI : 10.1126/science.289.5482.1139b
URL : http://hdl.handle.net/11858/00-001M-0000-0010-0970-1

C. Millar, L. Huynen, S. Subramanian, E. Mohandesan, and D. Lambert, New developments in ancient genomics, Trends in Ecology & Evolution, vol.23, issue.7, pp.386-393, 2008.
DOI : 10.1016/j.tree.2008.04.002

S. Paabo, Ancient DNA: extraction, characterization, molecular cloning, and enzymatic amplification., Proceedings of the National Academy of Sciences, vol.86, issue.6, pp.1939-1943, 1989.
DOI : 10.1073/pnas.86.6.1939
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC286820

K. Tanaka and A. Okamoto, Degradation of DNA by bisulfite treatment, Bioorganic & Medicinal Chemistry Letters, vol.17, issue.7, pp.1912-1915, 2007.
DOI : 10.1016/j.bmcl.2007.01.040

L. Zhang and Q. Wu, Single gene retrieval from thermally degraded DNA, Journal of Biosciences, vol.23, issue.5, pp.599-604, 2005.
DOI : 10.1007/BF02703559
URL : http://doi.org/10.1007/bf02703559

R. Dobberstein, J. Huppertz, V. Wurmb-schwark, N. Ritz-timme, and S. , Degradation of biomolecules in artificially and naturally aged teeth: Implications for age estimation based on aspartic acid racemization and DNA analysis, Forensic Science International, vol.179, issue.2-3, pp.181-191, 2008.
DOI : 10.1016/j.forsciint.2008.05.017

H. Donoghue, M. Spigelman, C. Greenblatt, G. Lev-maor, G. Bar-gal et al., Tuberculosis: from prehistory to Robert Koch, as revealed by ancient DNA, The Lancet Infectious Diseases, vol.4, issue.9, pp.584-592, 2004.
DOI : 10.1016/S1473-3099(04)01133-8

A. Zink, U. Reischl, H. Wolf, and A. Nerlich, Molecular analysis of ancient microbial infections, FEMS Microbiology Letters, vol.213, issue.2, pp.141-147, 2002.
DOI : 10.1111/j.1574-6968.2002.tb11298.x

M. Shleeva, G. Mukamolova, M. Young, H. Williams, and A. Kaprelyants, Formation of 'non-culturable' cells of Mycobacterium smegmatis in stationary phase in response to growth under suboptimal conditions and their Rpf-mediated resuscitation, Microbiology, vol.150, issue.6, pp.1687-1697, 2004.
DOI : 10.1099/mic.0.26893-0

H. Donoghue, A. Marcsik, C. Matheson, K. Vernon, E. Nuorala et al., Co-infection of Mycobacterium tuberculosis and Mycobacterium leprae in human archaeological samples: a possible explanation for the historical decline of leprosy, Proceedings of the Royal Society B: Biological Sciences, vol.272, issue.1561, pp.389-394, 2005.
DOI : 10.1098/rspb.2004.2966

C. Haas, A. Zink, G. Palfi, U. Szeimies, and A. Nerlich, Detection of Leprosy in Ancient Human Skeletal Remains by Molecular Identification of Mycobacterium leprae, American Journal of Clinical Pathology, vol.114, issue.3, pp.428-436, 2000.
DOI : 10.1093/ajcp/114.3.428

T. Nguyen-hieu, G. Aboudharam, M. Signoli, C. Rigeade, M. Drancourt et al., Evidence of a Louse-Borne Outbreak Involving Typhus in Douai, 1710-1712 during the War of Spanish Succession, PLoS ONE, vol.18, issue.131, p.15405, 2010.
DOI : 10.1371/journal.pone.0015405.t003
URL : https://hal.archives-ouvertes.fr/halshs-00592033

D. Raoult, O. Dutour, L. Houhamdi, R. Jankauskas, P. Fournier et al., Evidence for Louse???Transmitted Diseases in Soldiers of Napoleon???s Grand Army in Vilnius, The Journal of Infectious Diseases, vol.193, issue.1, pp.112-120, 2006.
DOI : 10.1086/498534

R. Bianucci, L. Rahalison, E. Massa, A. Peluso, E. Ferroglio et al., Technical note: A rapid diagnostic test detects plague in ancient human remains: An example of the interaction between archeological and biological approaches (southeastern France, 16th???18th centuries), American Journal of Physical Anthropology, vol.126, issue.4, pp.361-367, 2008.
DOI : 10.1002/ajpa.20818
URL : https://hal.archives-ouvertes.fr/halshs-00377597

M. Drancourt, M. Signoli, L. Dang, B. Bizot, V. Roux et al., Orientalis in Remains of Ancient Plague Patients, Emerging Infectious Diseases, vol.13, issue.2, pp.332-333, 2007.
DOI : 10.3201/eid1302.060197

M. Drancourt, G. Aboudharam, M. Signoli, O. Dutour, and D. Raoult, Detection of 400-year-old Yersinia pestis DNA in human dental pulp: An approach to the diagnosis of ancient septicemia, Proceedings of the National Academy of Sciences, vol.95, issue.21, pp.12637-12640, 1998.
DOI : 10.1073/pnas.95.21.12637

M. Drancourt, V. Roux, L. Dang, L. Tran-hung, D. Castex et al., , and Plague Pandemics, Emerging Infectious Diseases, vol.10, issue.9, pp.1585-1592, 2004.
DOI : 10.3201/eid1009.030933

M. Drancourt, L. Tran-hung, J. Courtin, H. Lumley, and D. Raoult, in a 4000???Year???Old Human Tooth, The Journal of Infectious Diseases, vol.191, issue.4, pp.607-611, 2005.
DOI : 10.1086/427041

V. La, B. Clavel, S. Lepetz, G. Aboudharam, D. Raoult et al., Molecular detection of bartonella henselae DNA in the dental pulp of 800-year-old French cats, Clin Infect Dis, vol.39, pp.1391-1394, 2004.

M. Papagrigorakis, C. Yapijakis, P. Synodinos, and E. Baziotopoulou-valavani, DNA examination of ancient dental pulp incriminates typhoid fever as a probable cause of the Plague of Athens, International Journal of Infectious Diseases, vol.10, issue.3, pp.206-214, 2006.
DOI : 10.1016/j.ijid.2005.09.001

T. Nguyen-hieu, G. Aboudharam, and M. Drancourt, Mini review: dental pulp as a source for paleomicrobiology, Bull Int Assoc Paleodont, vol.5, pp.48-54, 2011.

D. Costa, V. King, C. Kalan, L. Morar, M. Sung et al., Antibiotic resistance is ancient, Nature, vol.477, pp.457-461, 2011.

J. Noonan, M. Hofreiter, D. Smith, J. Priest, N. Rohland et al., Genomic Sequencing of Pleistocene Cave Bears, Science, vol.309, issue.5734, pp.597-599, 2005.
DOI : 10.1126/science.1113485

E. Friedberg, R. Wagner, and M. Radman, Specialized DNA Polymerases, Cellular Survival, and the Genesis of Mutations, Science, vol.296, issue.5573, pp.1627-1630, 2002.
DOI : 10.1126/science.1070236

S. Johnson, M. Hebsgaard, T. Christensen, M. Mastepanov, R. Nielsen et al., Ancient bacteria show evidence of DNA repair, Proceedings of the National Academy of Sciences, vol.104, issue.36, pp.14401-14405, 2007.
DOI : 10.1073/pnas.0706787104

S. Paabo, H. Poinar, D. Serre, V. Jaenicke-despres, J. Hebler et al., Genetic Analyses from Ancient DNA, Annual Review of Genetics, vol.38, issue.1, pp.645-679, 2004.
DOI : 10.1146/annurev.genet.37.110801.143214

D. Mitchell, E. Willerslev, and A. Hansen, Damage and repair of ancient DNA, Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, vol.571, issue.1-2, pp.265-276, 2005.
DOI : 10.1016/j.mrfmmm.2004.06.060

H. Ren and J. Liu, AsnB is involved in natural resistance of mycobacterium smegmatis to multiple drugs. Antimicrob Agents Ch, pp.250-255, 2006.

O. Marshall, PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR, Bioinformatics, vol.20, issue.15, pp.2471-2472, 2004.
DOI : 10.1093/bioinformatics/bth254