Resected RNA pseudoknots and their recognition by histidyl-tRNA synthetase. - Inserm - Institut national de la santé et de la recherche médicale Accéder directement au contenu
Article Dans Une Revue Proceedings of the National Academy of Sciences of the United States of America Année : 1998

Resected RNA pseudoknots and their recognition by histidyl-tRNA synthetase.

Résumé

Duplexes constituted by closed or open RNA circles paired to single-stranded oligonucleotides terminating with 3'-CCAOH form resected pseudoknots that are substrates of yeast histidyl-tRNA synthetase. Design of this RNA fold is linked to the mimicry of the pseudoknotted amino acid accepting branch of the tRNA-like domain from brome mosaic virus, known to be charged by tyrosyl-tRNA synthetases, with RNA minihelices recapitulating accepting branches of canonical tRNAs. Prediction of the histidylation function of the new family of minimalist tRNA-like structures relates to the geometry of resected pseudoknots that allows proper presentation to histidyl-tRNA synthetase of analogues of the histidine identity determinants N-1 and N73 present in tRNAs. This geometry is such that the analogue of the major N-1 histidine determinant in the RNA circles faces the analogue of the discriminator N73 nucleotide in the accepting oligonucleotides. The combination of identity elements found in tRNAHis species from archaea, eubacteria, and organelles (G-1/C73) is the most efficient for determining histidylation of the duplexes. The inverse combination (C-1/G73) leads to the worst histidine acceptors with charging efficiencies reduced by 2-3 orders of magnitude. Altogether, these findings open new perspectives for understanding evolution of tRNA identity and serendipitous RNA functions.
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Dates et versions

inserm-00719607 , version 1 (20-07-2012)

Identifiants

  • HAL Id : inserm-00719607 , version 1
  • PUBMED : 9724720

Citer

Brice Felden, Richard Giegé. Resected RNA pseudoknots and their recognition by histidyl-tRNA synthetase.. Proceedings of the National Academy of Sciences of the United States of America, 1998, 95 (18), pp.10431-6. ⟨inserm-00719607⟩
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