Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects, Biology of the Cell, vol.17, issue.2, pp.117-131, 2009. ,
DOI : 10.1042/BC20070137
The role of RNAs in the regulation of virulence-gene expression, Current Opinion in Microbiology, vol.9, issue.2, pp.229-236, 2006. ,
DOI : 10.1016/j.mib.2006.02.005
URL : https://hal.archives-ouvertes.fr/hal-00094433
Factor Fraction required for the Synthesis of Bacteriophage Q??-RNA, Nature, vol.59, issue.5154, pp.588-590, 1968. ,
DOI : 10.1038/219588a0
Predicted structure and phyletic distribution of the RNA-binding protein Hfq, Nucleic Acids Res, vol.30, pp.3662-3671, 2002. ,
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein, The EMBO Journal, vol.21, issue.13, pp.3546-3556, 2002. ,
DOI : 10.1093/emboj/cdf322
Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure, RNA, vol.9, issue.1, pp.33-43, 2003. ,
DOI : 10.1261/rna.2570803
Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta., Journal of Bacteriology, vol.176, issue.2, pp.531-534, 1994. ,
DOI : 10.1128/jb.176.2.531-534.1994
The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation, Nucleic Acids Research, vol.31, issue.24, pp.7302-7310, 2003. ,
DOI : 10.1093/nar/gkg915
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12, Molecular Microbiology, vol.161, issue.1, pp.35-49, 1994. ,
DOI : 10.1007/BF00277109
No detectable effect of RNA-binding protein Hfq absence in Staphylococcus aureus, BMC Microbiol, vol.7, issue.10, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00145606
Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism, Genes & Development, vol.21, issue.11, pp.1353-1366, 2007. ,
DOI : 10.1101/gad.423507
URL : https://hal.archives-ouvertes.fr/hal-00167517
Bacterial Small RNA Regulators, Critical Reviews in Biochemistry and Molecular Biology, vol.50, issue.2, pp.93-113, 2005. ,
DOI : 10.1080/10409230590918702
An Antisense RNA Inhibits Translation by Competing with Standby Ribosomes, Molecular Cell, vol.26, issue.3, pp.381-392, 2007. ,
DOI : 10.1016/j.molcel.2007.04.003
URL : http://doi.org/10.1016/j.molcel.2007.04.003
Novel Mechanism of Escherichia coli Porin Regulation, Journal of Bacteriology, vol.188, issue.2, pp.576-586, 2006. ,
DOI : 10.1128/JB.188.2.576-586.2006
An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin, Molecular Microbiology, vol.3, issue.3, pp.738-754, 2007. ,
DOI : 10.1074/jbc.M502050200
Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA, Nucleic Acids Research, vol.35, issue.3, pp.999-1006, 2007. ,
DOI : 10.1093/nar/gkl1124
URL : https://hal.archives-ouvertes.fr/hal-00161599
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator. Hfq Characterization of the role of ribonucleases in Salmonella small RNA decay, PLoS Genet. Nucleic Acids Res, vol.4, issue.35, pp.7651-7664, 2007. ,
Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools, Microbiology, vol.154, issue.10, pp.3175-3187, 2008. ,
DOI : 10.1099/mic.0.2008/019703-0
Translational control and target recognition by Escherichia coli small RNAs in vivo, Nucleic Acids Research, vol.35, issue.3, pp.1018-1037, 2007. ,
DOI : 10.1093/nar/gkl1040
RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs, Genes & Development, vol.19, issue.18, pp.2176-2186, 2005. ,
DOI : 10.1101/gad.1330405
The Small RNA Chaperone Hfq and Multiple Small RNAs Control Quorum Sensing in Vibrio harveyi and Vibrio cholerae, Cell, vol.118, issue.1, pp.69-82, 2004. ,
DOI : 10.1016/j.cell.2004.06.009
Regulatory small RNAs circumvent the conventional quorum sensing pathway in pandemic Vibrio cholerae, Proceedings of the National Academy of Sciences, vol.104, issue.27, pp.11145-11149, 2007. ,
DOI : 10.1073/pnas.0703860104
A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles, Molecular Microbiology, vol.163, issue.1, pp.100-111, 2008. ,
DOI : 10.1111/j.1365-2958.2008.06392.x
Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets, Nucleic Acids Research, vol.35, issue.3, pp.962-974, 2007. ,
DOI : 10.1093/nar/gkl1096
URL : https://hal.archives-ouvertes.fr/hal-00129258
Identification of a ??B-Dependent Small Noncoding RNA in Listeria monocytogenes, Journal of Bacteriology, vol.190, issue.18, pp.6264-6270, 2008. ,
DOI : 10.1128/JB.00740-08
Synthesis of staphylococcal virulence factors is controlled by a regulatory RNA molecule, EMBO J, vol.12, pp.3967-3975, 1993. ,
From The Cover: Small RNA genes expressed from Staphylococcus aureusgenomic and pathogenicity islands with specific expression among pathogenic strains, Proceedings of the National Academy of Sciences, vol.102, issue.40, pp.14249-14254, 2005. ,
DOI : 10.1073/pnas.0503838102
Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression, The EMBO Journal, vol.11, issue.4, pp.824-835, 2005. ,
DOI : 10.1023/A:1020660230497
URL : https://hal.archives-ouvertes.fr/pasteur-01404709
Inhibition of rot translation by RNAIII, a key feature of agr function, Molecular Microbiology, vol.12, issue.4, pp.1038-1048, 2006. ,
DOI : 10.1128/JB.186.24.8407-8423.2004
Small Untranslated RNA Antitoxin in Bacillus subtilis, Journal of Bacteriology, vol.187, issue.19, pp.6641-6650, 2005. ,
DOI : 10.1128/JB.187.19.6641-6650.2005
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1251590
Genes for Small, Noncoding RNAs under Sporulation Control in Bacillus subtilis, Journal of Bacteriology, vol.188, issue.2, pp.532-541, 2006. ,
DOI : 10.1128/JB.188.2.532-541.2006
genome is involved in the regulation of arginine catabolism, Molecular Microbiology, vol.9, issue.2, pp.520-536, 2006. ,
DOI : 10.1111/j.1365-2958.2006.05384.x
In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA, Nucleic Acids Research, vol.35, issue.13, pp.4331-4346, 2007. ,
DOI : 10.1093/nar/gkm439
The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins, Proceedings of the National Academy of Sciences, vol.105, issue.33, pp.11927-11932, 2008. ,
DOI : 10.1073/pnas.0711752105
An internal antisense RNA regulates expression of the photosynthesis gene isiA, Proceedings of the National Academy of Sciences, vol.103, issue.18, pp.7054-7058, 2006. ,
DOI : 10.1073/pnas.0600927103
The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803, Microbiology, vol.154, issue.10, pp.3134-3143, 2008. ,
DOI : 10.1099/mic.0.2008/020222-0
Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator, The EMBO Journal, vol.23, issue.2, 2004. ,
DOI : 10.1038/sj.emboj.7600058
Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq, Molecular Microbiology, vol.58, issue.4, pp.1013-1022, 2006. ,
DOI : 10.1046/j.1365-2958.2003.03734.x
Antisense RNAs everywhere? Trends Genet, pp.223-226, 2002. ,
DOI : 10.1016/s0168-9525(02)02658-6
Thermodynamics of RNA-RNA binding, Bioinformatics, vol.22, issue.10, pp.1177-1182, 2006. ,
DOI : 10.1093/bioinformatics/btl024
The C-terminal domain of Escherichia coli Hfq is required for regulation, Nucleic Acids Research, vol.36, issue.1, pp.133-143, 2008. ,
DOI : 10.1093/nar/gkm985
An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii, RNA, vol.13, issue.12, pp.2213-2223, 2007. ,
DOI : 10.1261/rna.689007
Hfq structure, function and ligand binding, Current Opinion in Microbiology, vol.10, issue.2, pp.125-133, 2007. ,
DOI : 10.1016/j.mib.2007.03.015
Identification of cyanobacterial non-coding RNAs by comparative genome analysis The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus The etiological agent of Lyme disease, Borrelia burgdorferi, appears to contain only a few small RNA molecules, Genome Biol. PLoS Genet. J. Bacteriol, vol.6, issue.186, pp.8472-8477, 2004. ,
Group A streptococcal growth phase-associated virulence factor regulation by a novel operon (Fas) with homologies to two-component-type regulators requires a small RNA molecule, Molecular Microbiology, vol.64, issue.2, pp.392-406, 2001. ,
DOI : 10.1128/JB.182.4.1062-1073.2000
RivR and the small RNA RivX: the missing links between the CovR regulatory cascade and the Mga regulon, Molecular Microbiology, vol.10, issue.0, pp.1506-1522, 2007. ,
DOI : 10.1073/pnas.82.23.8144
Synthesis of group A streptococcal virulence factors is controlled by a regulatory RNA molecule, Molecular Microbiology, vol.7, issue.Suppl., pp.1515-1527, 2004. ,
DOI : 10.1111/j.1365-2958.2004.04222.x
Distinct and overlapping binding sites of Pseudomonas aeruginosa Hfq and RsmA proteins on the non-coding RNA RsmY, Biochemical and Biophysical Research Communications, vol.352, issue.3, pp.769-773, 2007. ,
DOI : 10.1016/j.bbrc.2006.11.084
Global analysis of small RNA and mRNA targets of Hfq, Molecular Microbiology, vol.9, issue.4, pp.1111-1124, 2003. ,
DOI : 10.1046/j.1365-2958.2003.03734.x
Small non-coding RNAs in Caulobacter crescentus, Molecular Microbiology, vol.132, issue.3, pp.600-614, 2008. ,
DOI : 10.1046/j.1365-2958.2003.03734.x
The Hfq-Dependent Small Noncoding RNA NrrF Directly Mediates Fur-Dependent Positive Regulation of Succinate Dehydrogenase in Neisseria meningitidis, Journal of Bacteriology, vol.191, issue.4, pp.1330-1342, 2009. ,
DOI : 10.1128/JB.00849-08
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome, Molecular Microbiology, vol.27, issue.5, pp.1174-1191, 2007. ,
DOI : 10.1128/JB.188.1.124-131.2006
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites, Genes & Development, vol.21, issue.21, pp.2804-2817, 2007. ,
DOI : 10.1101/gad.447207
Small non-coding RNAs in Streptomyces coelicolor, Nucleic Acids Research, vol.36, issue.22, pp.7240-7251, 2008. ,
DOI : 10.1093/nar/gkn898
The Vienna RNA Websuite, Nucleic Acids Research, vol.36, issue.Web Server, pp.70-74, 2008. ,
DOI : 10.1093/nar/gkn188
Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs, Microbiology, vol.155, issue.1, p.115, 2009. ,
DOI : 10.1099/mic.0.023432-0
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding, The EMBO Journal, vol.17, issue.20, pp.6069-6075, 1998. ,
DOI : 10.1093/emboj/17.20.6069
Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon, Genes & Development, vol.16, issue.13, pp.1696-1706, 2002. ,
DOI : 10.1101/gad.231702
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA, Genes & Development, vol.19, issue.19, pp.2355-2366, 2005. ,
DOI : 10.1101/gad.354405