The global challenge of chronic kidney disease, Kidney International, vol.68, issue.6, pp.331-340, 2005. ,
DOI : 10.1111/j.1523-1755.2005.00774.x
An Overview of Intelligent Data Assistants for Data Analysis, Proc. of the 3rd Planning to Learn Workshop (WS9) at ECAI'10 2010, pp.7-14 ,
Urine in Clinical Proteomics, Molecular & Cellular Proteomics, vol.7, issue.10, pp.1850-1862, 2008. ,
DOI : 10.1074/mcp.R800001-MCP200
URL : https://hal.archives-ouvertes.fr/hal-00360866
Challenges in Integrating Biological Data Sources, Journal of Computational Biology, vol.2, issue.4, pp.557-572, 1995. ,
DOI : 10.1089/cmb.1995.2.557
State of the nation in data integration for bioinformatics, Journal of Biomedical Informatics, vol.41, issue.5, pp.687-693, 2008. ,
DOI : 10.1016/j.jbi.2008.01.008
The Molecular Biology Database Collection: 2008 update, Nucleic Acids Research, vol.36, issue.Database, pp.2-4, 2008. ,
DOI : 10.1093/nar/gkm1037
BioMart Central Portal--unified access to biological data, Nucleic Acids Research, vol.37, issue.Web Server, pp.23-27, 2009. ,
DOI : 10.1093/nar/gkp265
BioCatalogue: a universal catalogue of web services for the life sciences, Nucleic Acids Research, vol.38, issue.Web Server, pp.38-689, 2010. ,
DOI : 10.1093/nar/gkq394
An Identity Crisis in the Life Sciences, Nucleic Acids Research, pp.254-269, 2006. ,
DOI : 10.1007/11890850_26
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services, BMC Bioinformatics, vol.11, issue.1, 2010. ,
DOI : 10.1186/1471-2105-11-5
Integromics: challenges in data integration, Genome Biology, vol.3, issue.8, p.4027, 2002. ,
Techniques for integrating -omics data, Bioinformation, vol.3, issue.6, 2009. ,
DOI : 10.6026/97320630003284
Bioinformatics Data Source Integration Based on Semantic Relationships Across Species, In Data Mining and Bioinformatics Lecture Notes in Computer Science, vol.4316, pp.78-93, 2006. ,
DOI : 10.1007/11960669_8
BioDWH: a data warehouse kit for life science data integration, J Integr Bioinform, vol.5, issue.2, 2008. ,
XML, bioinformatics and data integration, Bioinformatics, vol.17, issue.2, pp.115-125, 2001. ,
DOI : 10.1093/bioinformatics/17.2.115
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/17/2/115
Integration of Biological Data with Semantic Networks, Current Bioinformatics, vol.1, issue.3, pp.273-290, 2006. ,
DOI : 10.2174/157489306777827946
The GRAIL concept modelling language for medical terminology, Artificial Intelligence in Medicine, vol.9, issue.2, pp.139-171, 1997. ,
DOI : 10.1016/S0933-3657(96)00369-7
Using OWL to model biological knowledge, International Journal of Human-Computer Studies, vol.65, issue.7, pp.583-594, 2007. ,
DOI : 10.1016/j.ijhcs.2007.03.006
OWL Web Ontology Language Reference, W3C Recommendation, 2004. ,
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration, Nature Biotechnology, vol.10, issue.11, pp.251251-1255, 2007. ,
DOI : 10.1038/nbt1346
The Semantic Web, Scientific American, vol.284, issue.5, pp.34-43, 2001. ,
DOI : 10.1038/scientificamerican0501-34
Life sciences on the Semantic Web: the Neurocommons and beyond, Briefings in Bioinformatics, vol.10, issue.2, pp.193-204, 2009. ,
DOI : 10.1093/bib/bbp004
Biological knowledge management: the emerging role of the Semantic Web technologies, Briefings in Bioinformatics, vol.10, issue.4, pp.392-407, 2009. ,
DOI : 10.1093/bib/bbp024
A journey to Semantic Web query federation in the life sciences, S7 http://www.jbiomedsem.com/content, pp.10-10, 2009. ,
A case study of integrating protein interaction data using semantic web technology, International Journal of Bioinformatics Research and Applications, vol.3, issue.3, pp.286-302, 2007. ,
DOI : 10.1504/IJBRA.2007.015004
An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence, Journal of Biomedical Informatics, vol.41, issue.5, pp.752-765, 2008. ,
DOI : 10.1016/j.jbi.2008.02.006
AlzPharm: integration of neurodegeneration data using RDF, BMC Bioinformatics, vol.8, issue.Suppl 3, p.4, 2007. ,
DOI : 10.1186/1471-2105-8-S3-S4
BioGateway: a semantic systems biology tool for the life sciences, BMC Bioinformatics, vol.10, issue.Suppl 10, pp.10-11, 2009. ,
DOI : 10.1186/1471-2105-10-S10-S11
Bio2RDF: Towards a mashup to build bioinformatics knowledge systems, Journal of Biomedical Informatics, vol.41, issue.5, pp.706-716, 2008. ,
DOI : 10.1016/j.jbi.2008.03.004
A Prototype Knowledge Base for the Life Sciences, W3C Interest Group Note ,
Gene Expression in the Normal Adult Human Kidney Assessed by Complementary DNA Microarray, Molecular Biology of the Cell, vol.15, issue.2, pp.649-656, 2004. ,
DOI : 10.1091/mbc.E03-06-0432
A panoramic view of gene expression in the human kidney, Proceedings of the National Academy of Sciences of the United States of America, pp.10013710-13715, 2003. ,
DOI : 10.1073/pnas.2234604100
Comprehensive human urine standards for comparability and standardization in clinical proteome analysis, PROTEOMICS - CLINICAL APPLICATIONS, vol.71, issue.4, pp.464-478, 2010. ,
DOI : 10.1002/prca.200900189
The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins, Genome Biology, vol.7, issue.9, p.80, 2006. ,
DOI : 10.1186/gb-2006-7-9-r80
Linked Data - The Story So Far, International Journal on Semantic Web and Information Systems, vol.5, issue.3, 2009. ,
DOI : 10.4018/jswis.2009081901
BioPortal: ontologies and integrated data resources at the click of a mouse, Nucleic Acids Research, vol.37, issue.Web Server, pp.37-170, 2009. ,
DOI : 10.1093/nar/gkp440
URL : https://hal.archives-ouvertes.fr/hal-00492020
The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data, Genome Biology, vol.6, issue.3, p.29, 2005. ,
DOI : 10.1186/gb-2005-6-3-r29
Integrating phenotype ontologies across multiple species, Genome Biology, vol.11, issue.1, p.2, 2010. ,
DOI : 10.1186/gb-2010-11-1-r2
URL : http://doi.org/10.1186/gb-2010-11-1-r2
CARO ??? The Common Anatomy Reference Ontology, Anatomy Ontologies for Bioinformatics Principles and Practice Volume, 2007. ,
DOI : 10.1007/978-1-84628-885-2_16
An ontology for cell types, Genome Biology, vol.6, issue.2, p.21, 2005. ,
DOI : 10.1186/gb-2005-6-2-r21
The Gene Ontology (GO) database and informatics resource, Nucleic Acids Research, vol.32, issue.90001, pp.258-261, 2004. ,
DOI : 10.1093/nar/gkh036
Supporting Early Adoption of OWL 1.1 with Protege-OWL and FaCT++, OWL: Experiences and Directions, 2006. ,
Mapping Master: a Spreadsheet to OWL Mapping Language ,
Populous: A Tool For Populating OWL Ontologies From Templates, Semantic Web Application and Tools for the Life Sciences, 2010. ,
DOI : 10.1038/npre.2010.5419.1
Modeling biomedical experimental processes with OBI, Journal of Biomedical Semantics, vol.1, issue.Suppl 1, p.7, 2010. ,
DOI : 10.1093/bioinformatics/btl207
Modeling sample variables with an Experimental Factor Ontology, Bioinformatics, vol.26, issue.8, pp.261112-1118, 2010. ,
DOI : 10.1093/bioinformatics/btq099
URL : https://hal.archives-ouvertes.fr/hal-00721833
Using ontologies to describe mouse phenotypes, Genome Biology, vol.6, issue.1, p.8, 2004. ,
DOI : 10.1186/gb-2004-6-1-r8
An Evaluation of Triple-Store Technologies for Large Data Stores In On the Move to Meaningful Internet Systems 2007: OTM 2007 Workshops, Volume4806 of Lecture Notes in Computer Science, pp.1105-1114, 2007. ,
Sesame: A Generic Architecture for Storing and Querying RDF and RDF Schema, The Semantic Web -ISWC 2002, pp.54-68, 2002. ,
DOI : 10.1007/3-540-48005-6_7
OWLIM ??? A Pragmatic Semantic Repository for OWL, WISE Workshops, pp.182-192, 2005. ,
DOI : 10.1007/11581116_19
Pellet: A practical OWL-DL reasoner, Web Semantics: Science, Services and Agents on the World Wide Web, vol.5, issue.2, pp.51-53, 2007. ,
DOI : 10.1016/j.websem.2007.03.004
FaCT++ Description Logic Reasoner: System Description, Proc. of the Int.Joint Conf. on Automated Reasoning, pp.292-297, 2006. ,
DOI : 10.1007/11814771_26
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.65.2672
Hypertableau Reasoning for Description Logics, Journal of Artificial Intelligence Research, vol.36, pp.165-228, 2009. ,
Gene Ontology: Tool for the Unification of Biology doi:10.1186/2041-1480-2-S2-S7 Cite this article as: Jupp et al.: Developing a kidney and urinary pathway knowledge base, Nature Genetics Journal of Biomedical Semantics, vol.25, issue.2 2, pp.25-29, 2000. ,