F. Dorella, L. Pacheco, S. Oliveira, A. Miyoshi, and V. Azevedo, : microbiology, biochemical properties, pathogenesis and molecular studies of virulence, Veterinary Research, vol.37, issue.2, pp.201-218, 2006.
DOI : 10.1051/vetres:2005056

G. Baird and M. Fontaine, Corynebacterium pseudotuberculosis and its Role in Ovine Caseous Lymphadenitis, Journal of Comparative Pathology, vol.137, issue.4, pp.179-210, 2007.
DOI : 10.1016/j.jcpa.2007.07.002

M. Paton, I. Rose, R. Hart, S. Sutherland, A. Mercy et al., New infection with Corynebacterium pseudotuberculosis reduces wool production, Australian Veterinary Journal, vol.69, issue.2, pp.47-49, 1994.
DOI : 10.1016/0378-1135(91)90031-A

S. Mckean, J. Davies, and R. Moore, Identification of macrophage induced genes of Corynebacterium pseudotuberculosis by differential fluorescence induction, Microbes and Infection, vol.7, issue.13, pp.1352-1363, 2005.
DOI : 10.1016/j.micinf.2005.05.002

J. Songer, Bacterial phospholipases and their role in virulence, Trends in Microbiology, vol.5, issue.4, pp.156-161, 1997.
DOI : 10.1016/S0966-842X(97)01005-6

T. Bregenzer, R. Frei, H. Ohnacker, and W. Zimmerli, Corynebacterium pseudotuberculosis infection in a butcher, Clinical Microbiology and Infection, vol.3, issue.6, pp.696-698, 1997.
DOI : 10.1111/j.1469-0691.1997.tb00482.x

M. Peel, G. Palmer, A. Stacpoole, and T. Kerr, Human Lymphadenitis Due to Corynebacterium pseudotuberculosis: Report of Ten Cases from Australia and Review, Clinical Infectious Diseases, vol.24, issue.2, pp.185-191, 1997.
DOI : 10.1093/clinids/24.2.185

G. Funke, A. Von-graevenitz, J. Clarridge, and K. Bernard, Clinical microbiology of coryneform bacteria, Clin Microbiol Rev, vol.10, pp.125-159, 1997.

M. Keslin, E. Mccoy, J. Mccusker, and J. Lutch, Corynebacterium pseudotuberculosis, The American Journal of Medicine, vol.67, issue.2, pp.228-231, 1979.
DOI : 10.1016/0002-9343(79)90395-4

J. Walker, H. Jackson, D. Eggleton, E. Meeusen, M. Wilson et al., Identification of a novel antigen from Corynebacterium pseudotuberculosis that protects sheep against caseous lymphadenitis, Infect Immun, vol.62, pp.2562-2567, 1994.

O. Join-lambert, M. Ouache, D. Canioni, J. Beretti, S. Blanche et al., CORYNEBACTERIUM PSEUDOTUBERCULOSIS NECROTIZING LYMPHADENITIS IN A TWELVE-YEAR-OLD PATIENT, The Pediatric Infectious Disease Journal, vol.25, issue.9, pp.848-851, 2006.
DOI : 10.1097/01.inf.0000234071.93044.77

P. Husemann and J. Stoye, r2cat: synteny plots and comparative assembly, Bioinformatics, vol.26, issue.4, pp.570-571, 2010.
DOI : 10.1093/bioinformatics/btp690

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2820676

A. Cerdeno-tarraga, A. Efstratiou, L. Dover, M. Holden, M. Pallen et al., The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129, Nucleic Acids Research, vol.31, issue.22, pp.6516-6523, 2003.
DOI : 10.1093/nar/gkg874

F. Meyer, A. Goesmann, A. Mchardy, D. Bartels, T. Bekel et al., GenDB--an open source genome annotation system for prokaryote genomes, Nucleic Acids Research, vol.31, issue.8, pp.2187-2195, 2003.
DOI : 10.1093/nar/gkg312

URL : http://doi.org/10.1093/nar/gkg312

T. Lowe and S. Eddy, tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence, Nucleic Acids Research, vol.25, issue.5, pp.955-964, 1997.
DOI : 10.1093/nar/25.5.0955

F. Gao and C. Zhang, Ori-Finder: A web-based system for finding oriCs in unannotated bacterial genomes, BMC Bioinformatics, vol.9, issue.1, p.79, 2008.
DOI : 10.1186/1471-2105-9-79

H. Hendrickson and J. Lawrence, Mutational bias suggests that replication termination occurs near the dif site, not at Ter sites, Molecular Microbiology, vol.59, issue.Pt 1, pp.42-56, 2007.
DOI : 10.1111/j.1365-2958.2007.05596.x

J. Blom, S. Albaum, D. Doppmeier, A. Pühler, F. Vorhölter et al., EDGAR: A software framework for the comparative analysis of prokaryotic genomes, BMC Bioinformatics, vol.10, issue.1, p.154, 2009.
DOI : 10.1186/1471-2105-10-154

M. Ventura, C. Canchaya, A. Tauch, G. Chandra, G. Fitzgerald et al., Genomics of Actinobacteria: Tracing the Evolutionary History of an Ancient Phylum, Microbiology and Molecular Biology Reviews, vol.71, issue.3, pp.495-548, 2007.
DOI : 10.1128/MMBR.00005-07

E. Trost, S. Götker, J. Schneider, S. Schneiker-bekel, R. Szczepanowski et al., Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion, BMC Genomics, vol.11, issue.1, p.91, 2010.
DOI : 10.1186/1471-2164-11-91

M. Yozwiak and J. Songer, Effect of Corynebacterium pseudotuberculosis phospholipase D on viability and chemotactic responses of ovine neutrophils, Am J Vet Res, vol.54, pp.392-397, 1993.

J. Schröder and A. Tauch, : the role of global, master and local regulators in the modular and hierarchical gene regulatory network, FEMS Microbiology Reviews, vol.34, issue.5, pp.685-737, 2010.
DOI : 10.1111/j.1574-6976.2010.00228.x

D. Rodionov, Comparative Genomic Reconstruction of Transcriptional Regulatory Networks in Bacteria, Chemical Reviews, vol.107, issue.8, pp.3467-3497, 2007.
DOI : 10.1021/cr068309+

K. Brinkrolf, I. Brune, and A. Tauch, The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum, Journal of Biotechnology, vol.129, issue.2, pp.191-211, 2007.
DOI : 10.1016/j.jbiotec.2006.12.013

I. Brune, K. Brinkrolf, J. Kalinowski, A. Pühler, and A. Tauch, The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences, BMC Genomics, vol.6, issue.1, p.86, 2005.
DOI : 10.1186/1471-2164-6-86

J. Ramos, M. Martinez-bueno, A. Molina-henares, W. Teran, K. Watanabe et al., The TetR Family of Transcriptional Repressors, Microbiology and Molecular Biology Reviews, vol.69, issue.2, pp.326-356, 2005.
DOI : 10.1128/MMBR.69.2.326-356.2005

S. Andrews, A. Robinson, and F. Rodriguez-quinones, Bacterial iron homeostasis, FEMS Microbiology Reviews, vol.27, issue.2-3, pp.215-237, 2003.
DOI : 10.1016/S0168-6445(03)00055-X

D. Oram, A. Avdalovic, and R. Holmes, Analysis of Genes That Encode DtxR-Like Transcriptional Regulators in Pathogenic and Saprophytic Corynebacterial Species, Infection and Immunity, vol.72, issue.4, pp.1885-1895, 2004.
DOI : 10.1128/IAI.72.4.1885-1895.2004

I. Brune, H. Werner, A. Hüser, J. Kalinowski, A. Pühler et al., The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum, BMC Genomics, vol.7, issue.1, p.21, 2006.
DOI : 10.1186/1471-2164-7-21

E. Drazek, C. Hammack, and M. Schmitt, Corynebacterium diphtheriae genes required for acquisition of iron from haemin and haemoglobin are homologous to ABC haemin transporters, Molecular Microbiology, vol.42, issue.1, pp.68-84, 2000.
DOI : 10.1046/j.1365-2958.1998.00873.x

C. Allen and M. Schmitt, HtaA Is an Iron-Regulated Hemin Binding Protein Involved in the Utilization of Heme Iron in Corynebacterium diphtheriae, Journal of Bacteriology, vol.191, issue.8, pp.2638-2648, 2009.
DOI : 10.1128/JB.01784-08

M. Schmitt, Utilization of host iron sources by Corynebacterium diphtheriae: identification of a gene whose product is homologous to eukaryotic heme oxygenases and is required for acquisition of iron from heme and hemoglobin., Journal of Bacteriology, vol.179, issue.3, pp.838-845, 1997.
DOI : 10.1128/jb.179.3.838-845.1997

M. Schmitt, Transcription of the Corynebacterium diphtheriae hmuO gene is regulated by iron and heme, Infect Immun, vol.65, pp.4634-4641, 1997.

L. Bibb, C. Kunkle, and M. Schmitt, The ChrA-ChrS and HrrA-HrrS Signal Transduction Systems Are Required for Activation of the hmuO Promoter and Repression of the hemA Promoter in Corynebacterium diphtheriae, Infection and Immunity, vol.75, issue.5, pp.2421-2431, 2007.
DOI : 10.1128/IAI.01821-06

J. Crosa and C. Walsh, Genetics and Assembly Line Enzymology of Siderophore Biosynthesis in Bacteria, Microbiology and Molecular Biology Reviews, vol.66, issue.2, pp.223-249, 2002.
DOI : 10.1128/MMBR.66.2.223-249.2002

M. Miethke and M. Marahiel, Siderophore-Based Iron Acquisition and Pathogen Control, Microbiology and Molecular Biology Reviews, vol.71, issue.3, pp.413-451, 2007.
DOI : 10.1128/MMBR.00012-07

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2168645

G. Challis, A Widely Distributed Bacterial Pathway for Siderophore Biosynthesis Independent of Nonribosomal Peptide Synthetases, ChemBioChem, vol.47, issue.4, pp.601-611, 2005.
DOI : 10.1002/cbic.200400283

F. Dorella, E. Estevam, L. Pacheco, C. Guimaraes, U. Lana et al., In vivo insertional mutagenesis in Corynebacterium pseudotuberculosis:a n efficient means to identify DNA sequences encoding exported proteins

C. Kunkle and M. Schmitt, Analysis of a DtxR-Regulated Iron Transport and Siderophore Biosynthesis Gene Cluster in Corynebacterium diphtheriae, Journal of Bacteriology, vol.187, issue.2, pp.422-433, 2005.
DOI : 10.1128/JB.187.2.422-433.2005

J. Wennerhold, A. Krug, and M. Bott, under Iron Limitation and Is Itself Repressed by DtxR, Journal of Biological Chemistry, vol.280, issue.49, pp.40500-40508, 2005.
DOI : 10.1074/jbc.M508693200

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.532.5279

B. Kana, E. Weinstein, D. Avarbock, S. Dawes, H. Rubin et al., Characterization of the cydAB-Encoded Cytochrome bd Oxidase from Mycobacterium smegmatis, Journal of Bacteriology, vol.183, issue.24, pp.7076-7086, 2001.
DOI : 10.1128/JB.183.24.7076-7086.2001

A. Martinez and R. Kolter, Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps., Journal of Bacteriology, vol.179, issue.16, pp.5188-5194, 1997.
DOI : 10.1128/jb.179.16.5188-5194.1997

G. Zhao, P. Ceci, A. Ilari, L. Giangiacomo, T. Laue et al., Iron and Hydrogen Peroxide Detoxification Properties of DNA-binding Protein from Starved Cells. A FERRITIN-LIKE DNA-BINDING PROTEIN OF ESCHERICHIA COLI, Journal of Biological Chemistry, vol.277, issue.31, pp.27689-27696, 2002.
DOI : 10.1074/jbc.M202094200

B. Gordon, Y. Li, L. Wang, A. Sintsova, H. Van-bakel et al., Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis, Proceedings of the National Academy of Sciences, vol.107, issue.11, pp.5154-5159, 2010.
DOI : 10.1073/pnas.0913551107

R. Colangeli, A. Haq, V. Arcus, E. Summers, R. Magliozzo et al., The multifunctional histone-like protein Lsr2 protects mycobacteria against reactive oxygen intermediates, Proceedings of the National Academy of Sciences, vol.106, issue.11, pp.4414-4418, 2009.
DOI : 10.1073/pnas.0810126106

E. Zaika, R. Perlow, E. Matz, S. Broyde, R. Gilboa et al., Substrate Discrimination by Formamidopyrimidine-DNA Glycosylase: A MUTATIONAL ANALYSIS, Journal of Biological Chemistry, vol.279, issue.6, pp.4849-4861, 2004.
DOI : 10.1074/jbc.M310262200

D. Hassett and M. Cohen, Bacterial adaptation to oxidative stress: implications for pathogenesis and interaction with phagocytic cells, Faseb J, vol.3, pp.2574-2582, 1989.

C. Nathan and M. Shiloh, Reactive oxygen and nitrogen intermediates in the relationship between mammalian hosts and microbial pathogens, Proceedings of the National Academy of Sciences, vol.97, issue.16, pp.8841-8848, 2000.
DOI : 10.1073/pnas.97.16.8841

G. Storz and L. Tartaglia, OxyR: a regulator of antioxidant genes, J Nutr, vol.122, pp.627-630, 1992.

Z. Wood, E. Schroder, R. Harris, J. Poole, and L. , Structure, mechanism and regulation of peroxiredoxins, Trends in Biochemical Sciences, vol.28, issue.1, pp.32-40, 2003.
DOI : 10.1016/S0968-0004(02)00003-8

B. Guimaraes, H. Souchon, N. Honore, B. Saint-joanis, R. Brosch et al., Defense System against Oxidative Stress, Journal of Biological Chemistry, vol.280, issue.27, pp.25735-25742, 2005.
DOI : 10.1074/jbc.M503076200

R. Bryk, P. Griffin, and C. Nathan, Peroxynitrite reductase activity of bacterial peroxiredoxins, Nature, vol.407, pp.211-215, 2000.

A. Marchler-bauer, J. Anderson, M. Derbyshire, C. Deweese-scott, N. Gonzales et al., CDD: a conserved domain database for interactive domain family analysis, Nucleic Acids Research, vol.35, issue.Database, pp.237-240, 2007.
DOI : 10.1093/nar/gkl951

M. Merkamm and A. Guyonvarch, Cloning of the sodA Gene from Corynebacterium melassecola and Role of Superoxide Dismutase in Cellular Viability, Journal of Bacteriology, vol.183, issue.4, pp.1284-1295, 2001.
DOI : 10.1128/JB.2001.183.4.1284-1295.2001

M. Babu, M. Priya, A. Selvan, M. Madera, J. Gough et al., A Database of Bacterial Lipoproteins (DOLOP) with Functional Assignments to Predicted Lipoproteins, Journal of Bacteriology, vol.188, issue.8, pp.2761-2773, 2006.
DOI : 10.1128/JB.188.8.2761-2773.2006

O. Dussurget, G. Stewart, O. Neyrolles, P. Pescher, D. Young et al., Role of Mycobacterium tuberculosis Copper-Zinc Superoxide Dismutase, Infection and Immunity, vol.69, issue.1, pp.529-533, 2001.
DOI : 10.1128/IAI.69.1.529-533.2001

D. Piddington, F. Fang, T. Laessig, A. Cooper, I. Orme et al., Cu,Zn Superoxide Dismutase of Mycobacterium tuberculosis Contributes to Survival in Activated Macrophages That Are Generating an Oxidative Burst, Infection and Immunity, vol.69, issue.8, pp.4980-4987, 2001.
DOI : 10.1128/IAI.69.8.4980-4987.2001

K. Wilks, K. Dunn, J. Farrant, K. Reddin, A. Gorringe et al., Periplasmic superoxide dismutase in meningococcal pathogenicity, Infect Immun, vol.66, pp.213-217, 1998.

S. Mateo, L. Toffer, K. Orndorff, P. Kawula, and T. , Neutropenia restores virulence to an attenuated Cu,Zn superoxide dismutase-deficient Haemophilus ducreyi strain in the swine model of chancroid, Infect Immun, vol.67, pp.5345-5351, 1999.

K. Papp-wallace and M. Maguire, Manganese Transport and the Role of Manganese in Virulence, Annual Review of Microbiology, vol.60, issue.1, pp.187-209, 2006.
DOI : 10.1146/annurev.micro.60.080805.142149

M. Schmitt, Analysis of a DtxR-Like Metalloregulatory Protein, MntR, from Corynebacterium diphtheriae That Controls Expression of an ABC Metal Transporter by an Mn2+-Dependent Mechanism, Journal of Bacteriology, vol.184, issue.24, pp.6882-6892, 2002.
DOI : 10.1128/JB.184.24.6882-6892.2002

J. Lee and J. Helmann, Functional specialization within the Fur family of metalloregulators, BioMetals, vol.60, issue.3-4, pp.485-499, 2007.
DOI : 10.1007/s10534-006-9070-7

J. Schröder, N. Jochmann, D. Rodionov, and A. Tauch, The Zur regulon of Corynebacterium glutamicum ATCC 13032, BMC Genomics, vol.11, issue.1, p.12, 2010.
DOI : 10.1186/1471-2164-11-12

A. Grover and R. Sharma, Identification and Characterization of a Major Zn(II) Resistance Determinant of Mycobacterium smegmatis, Journal of Bacteriology, vol.188, issue.19, pp.7026-7032, 2006.
DOI : 10.1128/JB.00643-06

C. Haas, D. Rodionov, J. Kropat, D. Malasarn, and S. Merchant, A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life, BMC Genomics, vol.10, issue.1, p.470, 2009.
DOI : 10.1186/1471-2164-10-470

W. Navarre and O. Schneewind, Surface proteins of gram-positive bacteria and mechanisms of their targeting to the cell wall envelope, Microbiol Mol Biol Rev, vol.63, pp.174-229, 1999.

H. Ton-that and O. Schneewind, Assembly of pili in Gram-positive bacteria, Trends in Microbiology, vol.12, issue.5, pp.228-234, 2004.
DOI : 10.1016/j.tim.2004.03.004

H. Ton-that, L. Marraffini, and O. Schneewind, Sortases and pilin elements involved in pilus assembly of Corynebacterium diphtheriae, Molecular Microbiology, vol.66, issue.1, pp.251-261, 2004.
DOI : 10.1111/j.1365-2958.2004.04117.x

A. Swaminathan, A. Mandlik, A. Swierczynski, A. Gaspar, and A. Das, Housekeeping sortase facilitates the cell wall anchoring of pilus polymers in Corynebacterium diphtheriae, Molecular Microbiology, vol.10, issue.4, pp.961-974, 2007.
DOI : 10.1186/1471-2180-4-38

T. Kohl, J. Baumbach, B. Jungwirth, A. Pühler, and A. Tauch, The GlxR regulon of the amino acid producer Corynebacterium glutamicum: In silico and in vitro detection of DNA binding sites of a global transcription regulator, Journal of Biotechnology, vol.135, issue.4, pp.340-350, 2008.
DOI : 10.1016/j.jbiotec.2008.05.011

T. Kohl and A. Tauch, The GlxR regulon of the amino acid producer Corynebacterium glutamicum: Detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model, Journal of Biotechnology, vol.143, issue.4, pp.239-246, 2009.
DOI : 10.1016/j.jbiotec.2009.08.005

A. Mandlik and A. Das, The molecular switch that activates the cell wall anchoring step of pilus assembly in gram-positive bacteria, Proceedings of the National Academy of Sciences, vol.105, issue.37, pp.14147-14152, 2008.
DOI : 10.1073/pnas.0806350105

A. Mandlik, A. Swierczynski, and A. Das, Corynebacterium diphtheriae employs specific minor pilins to target human pharyngeal epithelial cells, Molecular Microbiology, vol.66, issue.1, pp.111-124, 2007.
DOI : 10.1111/j.1365-2958.2007.05630.x

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2844904

S. Mckean, J. Davies, and R. Moore, Probing the heat shock response of Corynebacterium pseudotuberculosis: The major virulence factor, phospholipase D, is downregulated at 43??C, Research in Microbiology, vol.158, issue.3, pp.279-286, 2007.
DOI : 10.1016/j.resmic.2006.12.006

S. Mckean, J. Davies, and R. Moore, Expression of phospholipase D, the major virulence factor of Corynebacterium pseudotuberculosis, is regulated by multiple environmental factors and plays a role in macrophage death, Microbiology, vol.153, issue.7, pp.2203-2211, 2007.
DOI : 10.1099/mic.0.2007/005926-0

M. Wilson, M. Brandon, and J. Walker, Molecular and biochemical characterization of a protective 40-kilodalton antigen from Corynebacterium pseudotuberculosis, Infect Immun, vol.63, pp.206-211, 1995.

G. Dubin, Extracellular Proteases of Staphylococcus spp., Biological Chemistry, vol.383, issue.7-8, pp.1075-1086, 2002.
DOI : 10.1515/BC.2002.116

A. Mattos-guaraldi, D. Formiga, L. Pereira, and G. , Cell surface components and adhesionin Corynebacterium diphtheriae, Microbes and Infection, vol.2, issue.12, pp.1507-1512, 2000.
DOI : 10.1016/S1286-4579(00)01305-8

E. Vimr, K. Kalivoda, E. Deszo, and S. Steenbergen, Diversity of Microbial Sialic Acid Metabolism, Microbiology and Molecular Biology Reviews, vol.68, issue.1, pp.132-153, 2004.
DOI : 10.1128/MMBR.68.1.132-153.2004

S. Kim, D. Oh, O. Kwon, and H. Kang, Identification and functional characterization of the NanH extracellular sialidase from Corynebacterium diphtheriae, Journal of Biochemistry, vol.147, issue.4, pp.523-533, 2010.
DOI : 10.1093/jb/mvp198

M. Lde, O. Andrade, A. Vale, M. Souza, S. Hirata et al., Effects of iron limitation on adherence and cell surface carbohydrates of Corynebacterium diphtheriae strains, Appl Environ Microbiol, vol.69, pp.5907-5913, 2003.

L. Ott, M. Holler, R. Gerlach, M. Hensel, J. Rheinlaender et al., Corynebacterium diphtheriae invasion-associated protein (DIP1281) is involved in cell surface organization, adhesion and internalization in epithelial cells, BMC Microbiology, vol.10, issue.1, 2010.
DOI : 10.1186/1471-2180-10-2

B. Kana and V. Mizrahi, Resuscitation-promoting factors as lytic enzymes for bacterial growth and signaling, FEMS Immunology & Medical Microbiology, vol.58, issue.1, pp.39-50, 2010.
DOI : 10.1111/j.1574-695X.2009.00606.x

I. Boneca, The role of peptidoglycan in pathogenesis, Current Opinion in Microbiology, vol.8, issue.1, pp.46-53, 2005.
DOI : 10.1016/j.mib.2004.12.008

L. Lenz, S. Mohammadi, A. Geissler, and D. Portnoy, SecA2-dependent secretion of autolytic enzymes promotes Listeria monocytogenes pathogenesis, Proceedings of the National Academy of Sciences, vol.100, issue.21, pp.12432-12437, 2003.
DOI : 10.1073/pnas.2133653100

B. Jungwirth, D. Emer, I. Brune, N. Hansmeier, A. Pühler et al., Triple transcriptional control of the resuscitation promoting factor 2 (rpf2) gene of Corynebacterium glutamicum by the regulators of acetate metabolism RamA and RamB and the cAMP-dependent regulator GlxR, FEMS Microbiology Letters, vol.281, issue.2, pp.190-197, 2008.
DOI : 10.1111/j.1574-6968.2008.01098.x

A. Luthra, S. Malik, and R. Ramachandran, Cloning, purification and comparative structural analysis of two hypothetical proteins from Mycobacterium tuberculosis found in the human granuloma during persistence and highly up-regulated under carbon-starvation conditions, Protein Expression and Purification, vol.62, issue.1, pp.64-74, 2008.
DOI : 10.1016/j.pep.2008.06.011

N. Tucker, D. Autreaux, B. Studholme, D. Spiro, S. Dixon et al., DNA Binding Activity of the Escherichia coli Nitric Oxide Sensor NorR Suggests a Conserved Target Sequence in Diverse Proteobacteria, Journal of Bacteriology, vol.186, issue.19, pp.6656-6660, 2004.
DOI : 10.1128/JB.186.19.6656-6660.2004

S. Donadio, P. Monciardini, and M. Sosio, Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics, Natural Product Reports, vol.100, issue.393, pp.1073-1109, 2007.
DOI : 10.1039/b514050c

F. Healy, M. Wach, S. Krasnoff, D. Gibson, and L. R. , The txtAB genes of the plant pathogen Streptomyces acidiscabies encode a peptide synthetase required for phytotoxin thaxtomin A production and pathogenicity, Molecular Microbiology, vol.140, issue.4, pp.794-804, 2000.
DOI : 10.1038/nbt1183-784

R. Gande, L. Dover, K. Krumbach, G. Besra, H. Sahm et al., The Two Carboxylases of Corynebacterium glutamicum Essential for Fatty Acid and Mycolic Acid Synthesis, Journal of Bacteriology, vol.189, issue.14, pp.5257-5264, 2007.
DOI : 10.1128/JB.00254-07

M. Chami, K. Andreau, A. Lemassu, J. Petit, C. Houssin et al., Priming and activation of mouse macrophages by trehalose 6,6???-dicorynomycolate vesicles from Corynebacterium glutamicum, FEMS Immunology and Medical Microbiology, vol.32, issue.2, pp.141-147, 2002.
DOI : 10.1016/S0928-8244(01)00292-9

G. Hard, Electron microscopic examination of Corynebacterium ovis, J Bacteriol, vol.97, pp.1480-1485, 1969.

K. Takayama, C. Wang, and G. Besra, Pathway to Synthesis and Processing of Mycolic Acids in Mycobacterium tuberculosis, Clinical Microbiology Reviews, vol.18, issue.1, pp.81-101, 2005.
DOI : 10.1128/CMR.18.1.81-101.2005

S. Yellaboina, S. Ranjan, P. Chakhaiyar, S. Hasnain, and A. Ranjan, Prediction of DtxR regulon: identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae, BMC Microbiology, vol.4, issue.1, p.38, 2004.
DOI : 10.1186/1471-2180-4-38

D. Afonseca, V. Prosdocimi, F. Dorella, F. Pacheco, L. Moraes et al., Survey of genome organization and gene content of Corynebacterium pseudotuberculosis, Microbiological Research, vol.165, issue.4, pp.312-320, 2010.
DOI : 10.1016/j.micres.2009.05.009

D. Afonseca, V. Moraes, P. Dorella, F. Pacheco, L. Meyer et al., A description of genes of Corynebacterium pseudotuberculosis useful in diagnostics and vaccine applications, Genetics and Molecular Research, vol.7, issue.1, pp.252-260, 2008.
DOI : 10.4238/vol7-1gmr438

F. Dorella, L. Pacheco, N. Seyffert, R. Portela, R. Meyer et al., and prospects for vaccine development, Expert Review of Vaccines, vol.8, issue.2, pp.205-213, 2009.
DOI : 10.1586/14760584.8.2.205

D. Gordon, C. Abajian, and P. Green, A Graphical Tool for Sequence???Finishing, Genome Research, vol.8, issue.3, pp.195-202, 1998.
DOI : 10.1101/gr.8.3.195

A. Tauch, O. Kaiser, T. Hain, A. Goesmann, B. Weisshaar et al., Complete Genome Sequence and Analysis of the Multiresistant Nosocomial Pathogen Corynebacterium jeikeium K411, a Lipid-Requiring Bacterium of the Human Skin Flora, Journal of Bacteriology, vol.187, issue.13, pp.4671-4682, 2005.
DOI : 10.1128/JB.187.13.4671-4682.2005

J. Schneider, F. Vorhölter, E. Trost, J. Blom, Y. Musa et al., CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks, Genetics and Molecular Research, vol.9, issue.3, pp.1660-1672, 2010.
DOI : 10.4238/vol9-3gmr901

J. Gough, K. Karplus, R. Hughey, and C. Chothia, Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure, Journal of Molecular Biology, vol.313, issue.4, pp.903-919, 2001.
DOI : 10.1006/jmbi.2001.5080

R. Finn, J. Mistry, J. Tate, P. Coggill, A. Heger et al., The Pfam protein families database, Nucleic Acids Research, vol.38, issue.suppl_1, pp.211-222, 2010.
DOI : 10.1093/nar/gkp985

URL : https://hal.archives-ouvertes.fr/hal-01294685

S. Eddy, Profile hidden Markov models, Bioinformatics, vol.14, issue.9, pp.755-763, 1998.
DOI : 10.1093/bioinformatics/14.9.755

I. Dodd and J. Egan, Improved detection of helix-turn-helix DNA-binding motifs in protein sequences, Nucleic Acids Research, vol.18, issue.17, pp.5019-5026, 1990.
DOI : 10.1093/nar/18.17.5019

R. Tatusov, M. Galperin, D. Natale, and E. Koonin, The COG database: a tool for genome-scale analysis of protein functions and evolution, Nucleic Acids Research, vol.28, issue.1, pp.33-36, 2000.
DOI : 10.1093/nar/28.1.33

S. Altschul, T. Madden, A. Schaffer, J. Zhang, Z. Zhang et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997.
DOI : 10.1093/nar/25.17.3389

M. Beckstette, R. Homann, R. Giegerich, and S. Kurtz, Fast index based algorithms and software for matching position specific scoring matrices, BMC Bioinformatics, vol.7, issue.1, p.389, 2006.
DOI : 10.1186/1471-2105-7-389

J. Baumbach, T. Wittkop, C. Kleindt, and A. Tauch, Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet, Nature Protocols, vol.9, issue.6, pp.992-1005, 2009.
DOI : 10.1093/nar/gkg312

G. Crooks, G. Hon, J. Chandonia, and S. Brenner, WebLogo: A Sequence Logo Generator, Genome Research, vol.14, issue.6, pp.1188-1190, 2004.
DOI : 10.1101/gr.849004

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC419797